| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488568
Identifier: 103488568
GI number: 103488568
Start: 3242493
End: 3243104
Strand: Reverse
Name: 103488568
Synonym: Sala_3092
Alternate gene names: NA
Gene position: 3243104-3242493 (Counterclockwise)
Preceding gene: 103488569
Following gene: 103488567
Centisome position: 96.95
GC content: 65.85
Gene sequence:
>612_bases ATGAAATCCGCATGTCGTTTGTCGATGCTCGCCGCGGTTGCGGTGTCGGTGGGAGCGGGTTCACTCGCCTCCTTGAACGC CCAGCCCCCCGCAGACAAGATGTACCGGCCGCCCGAGGCGACGATCTACCGCGACGCCGGATATCGCGGCCCCGCCGTCT TCATCGGCGAGGCCAAGCCGAACCTCGGCCTTGCCTGGCCGGTCAATTCGGTTCGCGTCGCAAGCGGGCGGTGGGAGCTT TGCGAGCGCACGCGCTATCGCGGCAATTGCCGGACCATCGACCGCGACACGCCGATGCTCAACAATATCCTGCGCGGGCT GACGATCCAGTCGATCCGTCCGGTTGGCGATGACGGCGGCTGGAACCCGCATCCGCCCGCCAACGACCAGAGTGTGCGCG GCAATTTTGCCGAGTTCCATACCCAGCCATCGGCCGGGAACAGCCGTGTTCCCGCCTGCACCAGCGGTTCGGCGACCGCC AACTGCGCGGCGCGGAGCGCCGATACATGGTGCCGTTCGATCGGCTGGAATGGTTCGGCGCGCGAACATATGGAAACGGT CGGCGGCCGCATCTATCTCGCCGACGTACTGTGTGTCCGGTCGGGATATTGA
Upstream 100 bases:
>100_bases CGGCCAGAATCAGGCGTGACGATTGCAAGCGACAGACAAATAACGTAACCGTTCCGCTGAAAAAGTGTCCCGGGTCGTAA TCGTCAACAGGGAGGCTGCC
Downstream 100 bases:
>100_bases GGCGATCGCGCATGACGGGTTTCAAAATCCTCGCCGTCGGCGGAGCGGCGGCGCTGGCGCTGTCGGCCTGCGCCTCGGTC GGCGGGCCGGGCGTCAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MKSACRLSMLAAVAVSVGAGSLASLNAQPPADKMYRPPEATIYRDAGYRGPAVFIGEAKPNLGLAWPVNSVRVASGRWEL CERTRYRGNCRTIDRDTPMLNNILRGLTIQSIRPVGDDGGWNPHPPANDQSVRGNFAEFHTQPSAGNSRVPACTSGSATA NCAARSADTWCRSIGWNGSAREHMETVGGRIYLADVLCVRSGY
Sequences:
>Translated_203_residues MKSACRLSMLAAVAVSVGAGSLASLNAQPPADKMYRPPEATIYRDAGYRGPAVFIGEAKPNLGLAWPVNSVRVASGRWEL CERTRYRGNCRTIDRDTPMLNNILRGLTIQSIRPVGDDGGWNPHPPANDQSVRGNFAEFHTQPSAGNSRVPACTSGSATA NCAARSADTWCRSIGWNGSAREHMETVGGRIYLADVLCVRSGY >Mature_203_residues MKSACRLSMLAAVAVSVGAGSLASLNAQPPADKMYRPPEATIYRDAGYRGPAVFIGEAKPNLGLAWPVNSVRVASGRWEL CERTRYRGNCRTIDRDTPMLNNILRGLTIQSIRPVGDDGGWNPHPPANDQSVRGNFAEFHTQPSAGNSRVPACTSGSATA NCAARSADTWCRSIGWNGSAREHMETVGGRIYLADVLCVRSGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21810; Mature: 21810
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS50915 CRYSTALLIN_BETA_GAMMA L=rr
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSACRLSMLAAVAVSVGAGSLASLNAQPPADKMYRPPEATIYRDAGYRGPAVFIGEAKP CCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHCCCCCCCEEEECCCCCCCEEEEECCCC NLGLAWPVNSVRVASGRWELCERTRYRGNCRTIDRDTPMLNNILRGLTIQSIRPVGDDGG CCEEECCCCCEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHCCCCCCCCC WNPHPPANDQSVRGNFAEFHTQPSAGNSRVPACTSGSATANCAARSADTWCRSIGWNGSA CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCHHHHCCHHHHHHHCCCCCCH REHMETVGGRIYLADVLCVRSGY HHHHHHHCCEEEEEEHHHHHCCC >Mature Secondary Structure MKSACRLSMLAAVAVSVGAGSLASLNAQPPADKMYRPPEATIYRDAGYRGPAVFIGEAKP CCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHCCCCCCCEEEECCCCCCCEEEEECCCC NLGLAWPVNSVRVASGRWELCERTRYRGNCRTIDRDTPMLNNILRGLTIQSIRPVGDDGG CCEEECCCCCEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHCCCCCCCCC WNPHPPANDQSVRGNFAEFHTQPSAGNSRVPACTSGSATANCAARSADTWCRSIGWNGSA CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCHHHHCCHHHHHHHCCCCCCH REHMETVGGRIYLADVLCVRSGY HHHHHHHCCEEEEEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA