| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488563
Identifier: 103488563
GI number: 103488563
Start: 3238300
End: 3239571
Strand: Direct
Name: 103488563
Synonym: Sala_3087
Alternate gene names: NA
Gene position: 3238300-3239571 (Clockwise)
Preceding gene: 103488562
Following gene: 103488564
Centisome position: 96.81
GC content: 67.53
Gene sequence:
>1272_bases ATGGCCAGCCGCACCGACGCTTCGACCTGCTCCGACCCGATCGAGGCACTGACCGGGCGCTTCGCGGCGACGCGGCGGCT GTCGCTCGATCTCGTCGCGTCGCTTTCCGACGCCGACGCCAGCGCGCAGTCGATGCCCGACGCCTCGCCCGCCAAATGGC ATCTCGCGCACACCACATGGTTTTTTGAAACCTTCGTGCTCCGCGACCATGTGCCGGGTTATGCGCTTTTCGACGACCGC TTCCCCTATCTCTTCAACAGCTATTACGAGGCCGAAGGGCCGCGCCACGCGCGCCCGCAGCGGGGCCTGTTGACGCGCCC GTCGCTGGACGCGGTGCGTGCATGGCGTGCGCATGTCGATGCGGCGGTGGCGGACGCCTTGCCCGGCCTGTCCCCTGCGG CGCTCGCGCTGGTCGATCTCGGCATCCACCATGAACAACAGCATCAGGAACTGCTGCTCACCGACATCAAGCATCTCTTC GCGCAGAATCCGCTCGGCCCGGCGGTGTGGCCGCGCGACCATGCAAGCGCGAGTAAAGTTGCGCAGTTTTCCGCCATGAA ATGGATCGAGGGCAAAGCCGGTATCGCCGCGGCAGGACATGATGGCGACGGCTTTGCGTTCGATTGCGAAGGTCCGCGCC ACGACGCGCTGCTGACCCCGCACGCGCTCGCGAGCCGCCCTGTCACCAACGGCGAATGGCAGCAGTTTATCGACGACGGC GGCTATCGCACCCCCTCGCTCTGGCTCAGCGACGGCTGGGCGTGGGTGCAGGCGGAGGGCATCGAGGCGCCCGCCTATTG GCGCGATCGGCGATATTTCACCCTCGCTGGATGGCAGGACATCGACCCTGCCGCGCCGGTGACGCACATCGGTTTTTTCG AGGCCGACGCCTTTGCCAGCTGGGCGGGCGCGCGCCTGCCGACCGAGGTTGAATGGGAAGCGGCGGCGGCGGTGCTCGAT CCGAACGGCGGCGACCAGCTCGATGCCGCCGGTCCGGTGCAACCTGCGGCGGCCGGCGGCGACACCGGATTGCAACAGAT GTTCGGCAGCGTCTGGGAATGGACCGGCAGCGCCTATCGCCCCTATCCCGGCTTCCGTGCCGCGCCCGGCGCGGTCGGCG AATATAATGGCAAGTTCATGAGCGGCCAGTTCGTGCTGCGCGGCGGCAGCTGCGCCACCCCGCGCGGTCACATGCGCGCG ACATACCGCAATTTCTTCTACCCCCACCAGCGCTGGCAGTTCACCGGCGTGCGGCTCGCAAAGGATCTCTGA
Upstream 100 bases:
>100_bases GGGCAGCATGTTCCCTAAATGTTCTGGACAAGCCGCCGCGGCATAACGATAATCCGTTGAACCGCGAAACCGAATCGCAC TTCCAGGGATTGTTTACAGC
Downstream 100 bases:
>100_bases CATGGGTGTTGTGCGTCAACTTCGGCAGATTTCCGAGGATGATACGGGGGTCGACGTCGCCTTCCGCGCCGACGTCCATG CCGGGCTGTCCCAGACGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MASRTDASTCSDPIEALTGRFAATRRLSLDLVASLSDADASAQSMPDASPAKWHLAHTTWFFETFVLRDHVPGYALFDDR FPYLFNSYYEAEGPRHARPQRGLLTRPSLDAVRAWRAHVDAAVADALPGLSPAALALVDLGIHHEQQHQELLLTDIKHLF AQNPLGPAVWPRDHASASKVAQFSAMKWIEGKAGIAAAGHDGDGFAFDCEGPRHDALLTPHALASRPVTNGEWQQFIDDG GYRTPSLWLSDGWAWVQAEGIEAPAYWRDRRYFTLAGWQDIDPAAPVTHIGFFEADAFASWAGARLPTEVEWEAAAAVLD PNGGDQLDAAGPVQPAAAGGDTGLQQMFGSVWEWTGSAYRPYPGFRAAPGAVGEYNGKFMSGQFVLRGGSCATPRGHMRA TYRNFFYPHQRWQFTGVRLAKDL
Sequences:
>Translated_423_residues MASRTDASTCSDPIEALTGRFAATRRLSLDLVASLSDADASAQSMPDASPAKWHLAHTTWFFETFVLRDHVPGYALFDDR FPYLFNSYYEAEGPRHARPQRGLLTRPSLDAVRAWRAHVDAAVADALPGLSPAALALVDLGIHHEQQHQELLLTDIKHLF AQNPLGPAVWPRDHASASKVAQFSAMKWIEGKAGIAAAGHDGDGFAFDCEGPRHDALLTPHALASRPVTNGEWQQFIDDG GYRTPSLWLSDGWAWVQAEGIEAPAYWRDRRYFTLAGWQDIDPAAPVTHIGFFEADAFASWAGARLPTEVEWEAAAAVLD PNGGDQLDAAGPVQPAAAGGDTGLQQMFGSVWEWTGSAYRPYPGFRAAPGAVGEYNGKFMSGQFVLRGGSCATPRGHMRA TYRNFFYPHQRWQFTGVRLAKDL >Mature_422_residues ASRTDASTCSDPIEALTGRFAATRRLSLDLVASLSDADASAQSMPDASPAKWHLAHTTWFFETFVLRDHVPGYALFDDRF PYLFNSYYEAEGPRHARPQRGLLTRPSLDAVRAWRAHVDAAVADALPGLSPAALALVDLGIHHEQQHQELLLTDIKHLFA QNPLGPAVWPRDHASASKVAQFSAMKWIEGKAGIAAAGHDGDGFAFDCEGPRHDALLTPHALASRPVTNGEWQQFIDDGG YRTPSLWLSDGWAWVQAEGIEAPAYWRDRRYFTLAGWQDIDPAAPVTHIGFFEADAFASWAGARLPTEVEWEAAAAVLDP NGGDQLDAAGPVQPAAAGGDTGLQQMFGSVWEWTGSAYRPYPGFRAAPGAVGEYNGKFMSGQFVLRGGSCATPRGHMRAT YRNFFYPHQRWQFTGVRLAKDL
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46290; Mature: 46159
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRTDASTCSDPIEALTGRFAATRRLSLDLVASLSDADASAQSMPDASPAKWHLAHTTW CCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCHHHCCCCCCCCEEEEEHHHH FFETFVLRDHVPGYALFDDRFPYLFNSYYEAEGPRHARPQRGLLTRPSLDAVRAWRAHVD HHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AAVADALPGLSPAALALVDLGIHHEQQHQELLLTDIKHLFAQNPLGPAVWPRDHASASKV HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH AQFSAMKWIEGKAGIAAAGHDGDGFAFDCEGPRHDALLTPHALASRPVTNGEWQQFIDDG HHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCEECCHHHHCCCCCCCHHHHHHHCC GYRTPSLWLSDGWAWVQAEGIEAPAYWRDRRYFTLAGWQDIDPAAPVTHIGFFEADAFAS CCCCCEEEECCCEEEEEECCCCCCCEECCCEEEEEECCCCCCCCCCEEEEEEEEHHHHHH WAGARLPTEVEWEAAAAVLDPNGGDQLDAAGPVQPAAAGGDTGLQQMFGSVWEWTGSAYR HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC PYPGFRAAPGAVGEYNGKFMSGQFVLRGGSCATPRGHMRATYRNFFYPHQRWQFTGVRLA CCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEECCEEHC KDL CCC >Mature Secondary Structure ASRTDASTCSDPIEALTGRFAATRRLSLDLVASLSDADASAQSMPDASPAKWHLAHTTW CCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCHHHCCCCCCCCEEEEEHHHH FFETFVLRDHVPGYALFDDRFPYLFNSYYEAEGPRHARPQRGLLTRPSLDAVRAWRAHVD HHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AAVADALPGLSPAALALVDLGIHHEQQHQELLLTDIKHLFAQNPLGPAVWPRDHASASKV HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH AQFSAMKWIEGKAGIAAAGHDGDGFAFDCEGPRHDALLTPHALASRPVTNGEWQQFIDDG HHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCEECCHHHHCCCCCCCHHHHHHHCC GYRTPSLWLSDGWAWVQAEGIEAPAYWRDRRYFTLAGWQDIDPAAPVTHIGFFEADAFAS CCCCCEEEECCCEEEEEECCCCCCCEECCCEEEEEECCCCCCCCCCEEEEEEEEHHHHHH WAGARLPTEVEWEAAAAVLDPNGGDQLDAAGPVQPAAAGGDTGLQQMFGSVWEWTGSAYR HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC PYPGFRAAPGAVGEYNGKFMSGQFVLRGGSCATPRGHMRATYRNFFYPHQRWQFTGVRLA CCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEECCEEHC KDL CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA