| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fabG [H]
Identifier: 103488552
GI number: 103488552
Start: 3227190
End: 3228047
Strand: Reverse
Name: fabG [H]
Synonym: Sala_3076
Alternate gene names: 103488552
Gene position: 3228047-3227190 (Counterclockwise)
Preceding gene: 103488557
Following gene: 103488551
Centisome position: 96.5
GC content: 67.72
Gene sequence:
>858_bases ATGCGATTCGCAGGCAAAGTCGCCGTCGTCACCGGCGCGGCATCGGGCATCGGCAAGGCGACTGTGCTCAAACTCGCGGG CGAAGGCGCGCATGTCTTTGCCGCCGACATCGACGAAGCGGGCGGCCGCGCGCTCGCCGACGCGTCGAACGGCAGGATCG ACTTCGTGCGCTGCGACGTCACGGTTCCGTCCGATATCGAGGCGCTGATGGATGCCGCCGCGGCGAAGGCGGGCGGTATC GATATCGTCTTCAACAATGCCGCCGCGGGCGGCGACCGCGCGCCAATCGACGAGATTACGCCCGAGGGCTGGGATGCGAC GATGGACCTGGTGCTGAAATCGGTCGCGATGGGTATCCGTTATGCTGCGCCGCACATGAAGGGCCGCAAGGGCGCGAGCA TCGTCAACACCGCGAGCGTTGCGGCGCTGGGCGCCGGCTATTCGCCCACCGCCTATGCGGTGGCCAAGGCGGGCGTGCTG CATCTGACCAGGGTCGCCGCGACCGATCTGGCGCAATATGGCATCCGGGTGAACGCAATCTGCCCCGGCTTCATCAACAC CAATATCTTCGCCGCGTCGCTCGACGTGCCCGACGCGATGAAGGCAGAGGCGAACGCGATCATCGCCGGGATGAGCGCGC AGGCGCAACCCGTCGCGCGCGGCGGCCAGCCCGAGGACATTGCCAACGCCGTGGCGTATCTTGCGAGCGACGAGTCGAGC TTCATGACCGGCACGCATCTGCTCGTCGACGGCGGGCTGACGATCGGCCAGCGCCACGCCTGGGACCCCGAAACACCGGG GATGTTCGACGCGCTGGCGCAGATGGAGGAGGCTGCCAAGGCCGGAGCGCCAGCGTGA
Upstream 100 bases:
>100_bases TCGACGCCTGCCGCTACGGCGCCGTAGCGTCGAATCGACCGGCGTTGACGCGGCATTCGGCGCGCCTAAGCTAAGTGGCA AAAGAAAACGGGAGCAGGAT
Downstream 100 bases:
>100_bases GCGCGGCGATGGCCGCGGTCCCACGCCCCGAACGCCTGCCCGTCTGGCTGAAGGTCACGCACGGGCTGGGCAGCATCGCC TATGGCGTCAAGGACAACGG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MRFAGKVAVVTGAASGIGKATVLKLAGEGAHVFAADIDEAGGRALADASNGRIDFVRCDVTVPSDIEALMDAAAAKAGGI DIVFNNAAAGGDRAPIDEITPEGWDATMDLVLKSVAMGIRYAAPHMKGRKGASIVNTASVAALGAGYSPTAYAVAKAGVL HLTRVAATDLAQYGIRVNAICPGFINTNIFAASLDVPDAMKAEANAIIAGMSAQAQPVARGGQPEDIANAVAYLASDESS FMTGTHLLVDGGLTIGQRHAWDPETPGMFDALAQMEEAAKAGAPA
Sequences:
>Translated_285_residues MRFAGKVAVVTGAASGIGKATVLKLAGEGAHVFAADIDEAGGRALADASNGRIDFVRCDVTVPSDIEALMDAAAAKAGGI DIVFNNAAAGGDRAPIDEITPEGWDATMDLVLKSVAMGIRYAAPHMKGRKGASIVNTASVAALGAGYSPTAYAVAKAGVL HLTRVAATDLAQYGIRVNAICPGFINTNIFAASLDVPDAMKAEANAIIAGMSAQAQPVARGGQPEDIANAVAYLASDESS FMTGTHLLVDGGLTIGQRHAWDPETPGMFDALAQMEEAAKAGAPA >Mature_285_residues MRFAGKVAVVTGAASGIGKATVLKLAGEGAHVFAADIDEAGGRALADASNGRIDFVRCDVTVPSDIEALMDAAAAKAGGI DIVFNNAAAGGDRAPIDEITPEGWDATMDLVLKSVAMGIRYAAPHMKGRKGASIVNTASVAALGAGYSPTAYAVAKAGVL HLTRVAATDLAQYGIRVNAICPGFINTNIFAASLDVPDAMKAEANAIIAGMSAQAQPVARGGQPEDIANAVAYLASDESS FMTGTHLLVDGGLTIGQRHAWDPETPGMFDALAQMEEAAKAGAPA
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=35.408560311284, Blast_Score=127, Evalue=9e-30, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=32.156862745098, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI59889578, Length=258, Percent_Identity=36.046511627907, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=32.5757575757576, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=32.3076923076923, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI19923817, Length=297, Percent_Identity=27.6094276094276, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=30.5555555555556, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI4503301, Length=287, Percent_Identity=28.9198606271777, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=32.0158102766798, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=32.1782178217822, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=30.4182509505703, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=33.1578947368421, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=34.0540540540541, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI83715985, Length=263, Percent_Identity=28.1368821292776, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40548397, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI214010158, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI214010156, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI22758144, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI109715829, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4504505, Length=191, Percent_Identity=29.8429319371728, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI302344755, Length=105, Percent_Identity=38.0952380952381, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=29.7142857142857, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=36.328125, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1787905, Length=262, Percent_Identity=35.8778625954198, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI87082100, Length=270, Percent_Identity=35.5555555555556, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=32.5396825396825, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=30.1960784313725, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=29.6875, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI2367175, Length=263, Percent_Identity=28.8973384030418, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789378, Length=273, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788459, Length=265, Percent_Identity=30.5660377358491, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=29.0076335877863, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787820, Length=230, Percent_Identity=25.6521739130435, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367365, Length=258, Percent_Identity=27.1317829457364, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=25.8064516129032, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=37.0229007633588, Blast_Score=138, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=35.7142857142857, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562910, Length=276, Percent_Identity=34.4202898550725, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17538480, Length=277, Percent_Identity=35.7400722021661, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=33.7078651685393, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=33.976833976834, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI25147288, Length=261, Percent_Identity=35.2490421455939, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=31.9548872180451, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=34.5588235294118, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=32.8301886792453, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=32.6848249027237, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17531453, Length=284, Percent_Identity=32.0422535211268, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562908, Length=284, Percent_Identity=32.0422535211268, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=32.6771653543307, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17536025, Length=285, Percent_Identity=31.2280701754386, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17565030, Length=279, Percent_Identity=34.7670250896057, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=32.4817518248175, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=32.8125, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=31.4606741573034, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=32.295719844358, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=29.7397769516729, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17561272, Length=280, Percent_Identity=33.2142857142857, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560220, Length=296, Percent_Identity=30.7432432432432, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=30.4832713754647, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536651, Length=280, Percent_Identity=29.6428571428571, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=29.6577946768061, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=29.9212598425197, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17568967, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=27.3764258555133, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=295, Percent_Identity=24.7457627118644, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193207185, Length=149, Percent_Identity=31.5436241610738, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=29.2307692307692, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=260, Percent_Identity=24.2307692307692, Blast_Score=62, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=216, Percent_Identity=27.3148148148148, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=33.203125, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI23397609, Length=265, Percent_Identity=33.9622641509434, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24644339, Length=268, Percent_Identity=33.2089552238806, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=33.8582677165354, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI28571526, Length=266, Percent_Identity=34.2105263157895, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI21357041, Length=266, Percent_Identity=33.4586466165414, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=31.6205533596838, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24644337, Length=120, Percent_Identity=40.8333333333333, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24665243, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221331218, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649181, Length=196, Percent_Identity=29.5918367346939, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281364494, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665264, Length=200, Percent_Identity=32.5, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=27.3092369477912, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24665268, Length=212, Percent_Identity=30.188679245283, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 28836; Mature: 28836
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFAGKVAVVTGAASGIGKATVLKLAGEGAHVFAADIDEAGGRALADASNGRIDFVRCDV CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEEEEE TVPSDIEALMDAAAAKAGGIDIVFNNAAAGGDRAPIDEITPEGWDATMDLVLKSVAMGIR ECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH YAAPHMKGRKGASIVNTASVAALGAGYSPTAYAVAKAGVLHLTRVAATDLAQYGIRVNAI HCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE CPGFINTNIFAASLDVPDAMKAEANAIIAGMSAQAQPVARGGQPEDIANAVAYLASDESS CCCCCCCCEEEEECCCCHHHHHCCCEEEECCCCCCCHHHCCCCHHHHHHHHHHHHCCCCC FMTGTHLLVDGGLTIGQRHAWDPETPGMFDALAQMEEAAKAGAPA EEECEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRFAGKVAVVTGAASGIGKATVLKLAGEGAHVFAADIDEAGGRALADASNGRIDFVRCDV CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEEEEE TVPSDIEALMDAAAAKAGGIDIVFNNAAAGGDRAPIDEITPEGWDATMDLVLKSVAMGIR ECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH YAAPHMKGRKGASIVNTASVAALGAGYSPTAYAVAKAGVLHLTRVAATDLAQYGIRVNAI HCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE CPGFINTNIFAASLDVPDAMKAEANAIIAGMSAQAQPVARGGQPEDIANAVAYLASDESS CCCCCCCCEEEEECCCCHHHHHCCCEEEECCCCCCCHHHCCCCHHHHHHHHHHHHCCCCC FMTGTHLLVDGGLTIGQRHAWDPETPGMFDALAQMEEAAKAGAPA EEECEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]