| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ppc [H]
Identifier: 103488557
GI number: 103488557
Start: 3232309
End: 3234978
Strand: Reverse
Name: ppc [H]
Synonym: Sala_3081
Alternate gene names: 103488557
Gene position: 3234978-3232309 (Counterclockwise)
Preceding gene: 103488558
Following gene: 103488552
Centisome position: 96.71
GC content: 67.68
Gene sequence:
>2670_bases ATGGGCCCACCGATCCAGATCTCGCAGAATCCCGACATCCGCTATCTCGGGCGGATCCTCGGCGACGTCATCCGCGCCTA TGGCGGCGACAAATTGTTCCGCCAGACCGAATATATCCGCTCGTCGAGCGTCGACAGGCACCGCGGGATCGCGGGGGCGG AGGCGATCGATCCGGGACTCGATGCGCTGAGCCTCGACGACACCATCGCCTTCGTCCGCGGTTTCATGCTCTTTTCGATG CTCGCCAACCTCGCCGAAGACCGCCAGGGTATCGCCGCCGAGCCCGAAGCGACGGTTGCGGCGGCGCTGGAAAAGCTGAA AGCCGACGGGATCGACAGCGCGGCAGTCGCGGCGCTGCTGAACGCGGCGCTGATCGCGCCGGTGCTCACCGCGCACCCGA CCGAGGTGCGGCGCAAGTCGATGCTCGACCACAAGAACCGCATCGCCGAACTGATGCGGATGCGCGATGCGGGCCTCGAC GAAACACCCGAAGGCGATGTGGTCGAGGACGCGATCCGGCGGCAGGTCGTGCTGCTGTGGCAGACGCGCCCGCTGCGCAC GCAGAAATTGTTCGTCGCCGACGAGATCGACAATGCGCTCACCTATTTGCGCGACGTCTTCCTGCCCGTGGTGCCCAAAC TTTATGCGCGCTGGGAAAAGGAGTTGGGGCAGCGCCCCGCGAGCTTCCTGCGCATCGGCAGCTGGATCGGCGGCGACCGC GACGGCAATCCCTTCGTCACCGCCGAAACGCTGCGCATGGCGACGGGCCGCAATGCCGCGGCGGTGATCGGCCATTATAT CGACCAGGTTCATGCGCTCGGCGCCGAACTGTCGGTATCGTCGACGCTCGCGCCAGTGACCGACGCGGTCGAAGCCCTCG CCGAGGCGAGCGGCGACACCGCGCCGAGCCGCAGCGACGAACCCTATCGCCGCGCGCTGTCGGGCATCTATGCCCGGCTG TCGGCGACTTACGCCGCGATCACCGGCAAGCCGCCCCCGCGCCCCGGCGCGCTGAAGGGCGAACCCTATGCCGCGCCCGG CGATTTCCGCCGCGACCTCGTCACCATCGCCAGCGGCCTGTCGGCGAGCGGCAAGGGCCAGCTCGCCGGAATCGGTGCGC TCGGGCGGCTGATCCGCGCGGTCGAGGTGTTCGGATTCCATCTGGCGACGCTCGACATGCGGCAGAACAGCGCGGTCCAC GAACGCGTGCTCGCCGAACTGTTCAACATATCGGGGGTCGAAGCCGATTATCTGACGCTCGACGAAGCGGCGCGCGTCGC GTTGCTGCGCAAGGAGCTTGGCGTCAACCGCCCGCTCGCCGCGCCGTGGCACGAATGGAGCGAGGAGACGGCGGGCGAAC TCGCGATCGTCCACGCCGCCGCCGACGTGCGCAAGAGGCTGGGCAAGGACGCGATCGTCCAGTGGATCATCAGCAAGGCC GAAAGCCTGTCCGACCTGCTCGAAGTCCATGTGCTGGCGCGCGAGGGCGGGCTGTGGTCGGCGGAGAGCCGCGACAATCT GATGGTGGTGCCGCTGTTCGAGACGATCGCCGACCTCGATGACGCGCCCGCGATCATGGCGGCCTATTTCGCGCTGCCCG AAATCGCGCCGCATGTCGCTGCGCGCGGACATCAGGAAGTGATGATCGGCTATTCGGATTCGAACAAGGACGGCGGTTAT CTGACGTCGACCTGGGGGCTGCACCAGGCGTCGGCGGCGCTGACCCCGGTGTTCGAGCAAGCCGACACCGCGATGCAGCT GTTCCACGGCCGCGGTGGCGCGGTCGGGCGCGGCGGCGGCAGCGCCTTTGCCGCGATCCGCGCGCAGCCCGCGGGCACGG TGCAGGGACGCATCCGCATCACCGAACAGGGCGAGGTGATCGCGGCGAAATATGGCACGATCGACAGCGCGGCGACCAAT CTGGAAGCGATGGTGTCGGCGAGCCTGCTCGCGAGCCTCGAGCCCGAGGCGATGGGCGCGAAGGAAGCGGAGCGCTTTAC CGCGGCGATGGACGCGCTGTCGGACACCGCCTTCGCCGCCTATCGCGGGCTGGTTTACGATACCCCGGCGTTCAGGGATT TTTTCCGCGCGATGACGCCGATCGCCGAGATTGCGACGCTCAAGATCGGGTCGCGGCCGTCGAGCCGCACCAAATCGACC GCGATCGAGGATCTGCGCGCAATTCCCTGGGTGTTCAGCTGGGCGCAGGCGCGCACGATGCTGCCCGGCTGGTACGGCAC GGGCGAAGCCTTCGCGGCGTTCGCGGACAAGGCGCTGCTGACCGACATGGCGGCGAGCTGGCCCTTCTTTGCCGCGCTGC TCGGCAATATGGAGATGGTGCTCGCCAAGTCCGACATGGGGATTGCGGCGCGCTATGCGGGGCTGGCGAGCCAGATCGAC GGACATGACGCGATCTTCGGTCGCATCAAGGACGGGTGGAACCGCGCGCACGACGGACTGCTCGAGATCACCGGCCAGAC ACGGCTGCTCGAGAAGAACCCGGCGCTCGAGGCGTCGATCCGGCTGCGCCTGCCCTATATCGAACCGCTCAACCTGCTCC AGATCGAGCTGATGAAGCGCCACCGCGCGGGCGAAACCGATCCGCGCATCGCCGAGGGCATCCAGCTGACGATCAACGCG ATTGCGACGGCGCTGAGGAACAGCGGGTAG
Upstream 100 bases:
>100_bases ATATGGGCATGTTGATGCTGGTCAAAACGCATTGAACTAACCCAAGCATAGCTATGCGCGGCTTGACCCTCGGCCTTCGC AGGTGCAGCAAGCTGGGCGC
Downstream 100 bases:
>100_bases ACTCCTCTCCTTCCGTCATCCCGGCGAAGGCCGGGATCTCGCCGGTGCCTCAACACGATAGGGTGAGACCCCGGCCTTCG CCGGGGTGACGATTATGAGG
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 889; Mature: 888
Protein sequence:
>889_residues MGPPIQISQNPDIRYLGRILGDVIRAYGGDKLFRQTEYIRSSSVDRHRGIAGAEAIDPGLDALSLDDTIAFVRGFMLFSM LANLAEDRQGIAAEPEATVAAALEKLKADGIDSAAVAALLNAALIAPVLTAHPTEVRRKSMLDHKNRIAELMRMRDAGLD ETPEGDVVEDAIRRQVVLLWQTRPLRTQKLFVADEIDNALTYLRDVFLPVVPKLYARWEKELGQRPASFLRIGSWIGGDR DGNPFVTAETLRMATGRNAAAVIGHYIDQVHALGAELSVSSTLAPVTDAVEALAEASGDTAPSRSDEPYRRALSGIYARL SATYAAITGKPPPRPGALKGEPYAAPGDFRRDLVTIASGLSASGKGQLAGIGALGRLIRAVEVFGFHLATLDMRQNSAVH ERVLAELFNISGVEADYLTLDEAARVALLRKELGVNRPLAAPWHEWSEETAGELAIVHAAADVRKRLGKDAIVQWIISKA ESLSDLLEVHVLAREGGLWSAESRDNLMVVPLFETIADLDDAPAIMAAYFALPEIAPHVAARGHQEVMIGYSDSNKDGGY LTSTWGLHQASAALTPVFEQADTAMQLFHGRGGAVGRGGGSAFAAIRAQPAGTVQGRIRITEQGEVIAAKYGTIDSAATN LEAMVSASLLASLEPEAMGAKEAERFTAAMDALSDTAFAAYRGLVYDTPAFRDFFRAMTPIAEIATLKIGSRPSSRTKST AIEDLRAIPWVFSWAQARTMLPGWYGTGEAFAAFADKALLTDMAASWPFFAALLGNMEMVLAKSDMGIAARYAGLASQID GHDAIFGRIKDGWNRAHDGLLEITGQTRLLEKNPALEASIRLRLPYIEPLNLLQIELMKRHRAGETDPRIAEGIQLTINA IATALRNSG
Sequences:
>Translated_889_residues MGPPIQISQNPDIRYLGRILGDVIRAYGGDKLFRQTEYIRSSSVDRHRGIAGAEAIDPGLDALSLDDTIAFVRGFMLFSM LANLAEDRQGIAAEPEATVAAALEKLKADGIDSAAVAALLNAALIAPVLTAHPTEVRRKSMLDHKNRIAELMRMRDAGLD ETPEGDVVEDAIRRQVVLLWQTRPLRTQKLFVADEIDNALTYLRDVFLPVVPKLYARWEKELGQRPASFLRIGSWIGGDR DGNPFVTAETLRMATGRNAAAVIGHYIDQVHALGAELSVSSTLAPVTDAVEALAEASGDTAPSRSDEPYRRALSGIYARL SATYAAITGKPPPRPGALKGEPYAAPGDFRRDLVTIASGLSASGKGQLAGIGALGRLIRAVEVFGFHLATLDMRQNSAVH ERVLAELFNISGVEADYLTLDEAARVALLRKELGVNRPLAAPWHEWSEETAGELAIVHAAADVRKRLGKDAIVQWIISKA ESLSDLLEVHVLAREGGLWSAESRDNLMVVPLFETIADLDDAPAIMAAYFALPEIAPHVAARGHQEVMIGYSDSNKDGGY LTSTWGLHQASAALTPVFEQADTAMQLFHGRGGAVGRGGGSAFAAIRAQPAGTVQGRIRITEQGEVIAAKYGTIDSAATN LEAMVSASLLASLEPEAMGAKEAERFTAAMDALSDTAFAAYRGLVYDTPAFRDFFRAMTPIAEIATLKIGSRPSSRTKST AIEDLRAIPWVFSWAQARTMLPGWYGTGEAFAAFADKALLTDMAASWPFFAALLGNMEMVLAKSDMGIAARYAGLASQID GHDAIFGRIKDGWNRAHDGLLEITGQTRLLEKNPALEASIRLRLPYIEPLNLLQIELMKRHRAGETDPRIAEGIQLTINA IATALRNSG >Mature_888_residues GPPIQISQNPDIRYLGRILGDVIRAYGGDKLFRQTEYIRSSSVDRHRGIAGAEAIDPGLDALSLDDTIAFVRGFMLFSML ANLAEDRQGIAAEPEATVAAALEKLKADGIDSAAVAALLNAALIAPVLTAHPTEVRRKSMLDHKNRIAELMRMRDAGLDE TPEGDVVEDAIRRQVVLLWQTRPLRTQKLFVADEIDNALTYLRDVFLPVVPKLYARWEKELGQRPASFLRIGSWIGGDRD GNPFVTAETLRMATGRNAAAVIGHYIDQVHALGAELSVSSTLAPVTDAVEALAEASGDTAPSRSDEPYRRALSGIYARLS ATYAAITGKPPPRPGALKGEPYAAPGDFRRDLVTIASGLSASGKGQLAGIGALGRLIRAVEVFGFHLATLDMRQNSAVHE RVLAELFNISGVEADYLTLDEAARVALLRKELGVNRPLAAPWHEWSEETAGELAIVHAAADVRKRLGKDAIVQWIISKAE SLSDLLEVHVLAREGGLWSAESRDNLMVVPLFETIADLDDAPAIMAAYFALPEIAPHVAARGHQEVMIGYSDSNKDGGYL TSTWGLHQASAALTPVFEQADTAMQLFHGRGGAVGRGGGSAFAAIRAQPAGTVQGRIRITEQGEVIAAKYGTIDSAATNL EAMVSASLLASLEPEAMGAKEAERFTAAMDALSDTAFAAYRGLVYDTPAFRDFFRAMTPIAEIATLKIGSRPSSRTKSTA IEDLRAIPWVFSWAQARTMLPGWYGTGEAFAAFADKALLTDMAASWPFFAALLGNMEMVLAKSDMGIAARYAGLASQIDG HDAIFGRIKDGWNRAHDGLLEITGQTRLLEKNPALEASIRLRLPYIEPLNLLQIELMKRHRAGETDPRIAEGIQLTINAI ATALRNSG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=914, Percent_Identity=32.7133479212254, Blast_Score=387, Evalue=1e-108,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 95805; Mature: 95674
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPPIQISQNPDIRYLGRILGDVIRAYGGDKLFRQTEYIRSSSVDRHRGIAGAEAIDPGL CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCHHCCCCC DALSLDDTIAFVRGFMLFSMLANLAEDRQGIAAEPEATVAAALEKLKADGIDSAAVAALL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH NAALIAPVLTAHPTEVRRKSMLDHKNRIAELMRMRDAGLDETPEGDVVEDAIRRQVVLLW HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEE QTRPLRTQKLFVADEIDNALTYLRDVFLPVVPKLYARWEKELGQRPASFLRIGSWIGGDR ECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC DGNPFVTAETLRMATGRNAAAVIGHYIDQVHALGAELSVSSTLAPVTDAVEALAEASGDT CCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC APSRSDEPYRRALSGIYARLSATYAAITGKPPPRPGALKGEPYAAPGDFRRDLVTIASGL CCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC SASGKGQLAGIGALGRLIRAVEVFGFHLATLDMRQNSAVHERVLAELFNISGVEADYLTL CCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHEEH DEAARVALLRKELGVNRPLAAPWHEWSEETAGELAIVHAAADVRKRLGKDAIVQWIISKA HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHHHHCHHHHHHHHHHHH ESLSDLLEVHVLAREGGLWSAESRDNLMVVPLFETIADLDDAPAIMAAYFALPEIAPHVA HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ARGHQEVMIGYSDSNKDGGYLTSTWGLHQASAALTPVFEQADTAMQLFHGRGGAVGRGGG HCCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SAFAAIRAQPAGTVQGRIRITEQGEVIAAKYGTIDSAATNLEAMVSASLLASLEPEAMGA CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHCCH KEAERFTAAMDALSDTAFAAYRGLVYDTPAFRDFFRAMTPIAEIATLKIGSRPSSRTKST HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHH AIEDLRAIPWVFSWAQARTMLPGWYGTGEAFAAFADKALLTDMAASWPFFAALLGNMEMV HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEE LAKSDMGIAARYAGLASQIDGHDAIFGRIKDGWNRAHDGLLEITGQTRLLEKNPALEASI EEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCEEEE RLRLPYIEPLNLLQIELMKRHRAGETDPRIAEGIQLTINAIATALRNSG EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GPPIQISQNPDIRYLGRILGDVIRAYGGDKLFRQTEYIRSSSVDRHRGIAGAEAIDPGL CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCHHCCCCC DALSLDDTIAFVRGFMLFSMLANLAEDRQGIAAEPEATVAAALEKLKADGIDSAAVAALL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH NAALIAPVLTAHPTEVRRKSMLDHKNRIAELMRMRDAGLDETPEGDVVEDAIRRQVVLLW HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEE QTRPLRTQKLFVADEIDNALTYLRDVFLPVVPKLYARWEKELGQRPASFLRIGSWIGGDR ECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC DGNPFVTAETLRMATGRNAAAVIGHYIDQVHALGAELSVSSTLAPVTDAVEALAEASGDT CCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC APSRSDEPYRRALSGIYARLSATYAAITGKPPPRPGALKGEPYAAPGDFRRDLVTIASGL CCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC SASGKGQLAGIGALGRLIRAVEVFGFHLATLDMRQNSAVHERVLAELFNISGVEADYLTL CCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHEEH DEAARVALLRKELGVNRPLAAPWHEWSEETAGELAIVHAAADVRKRLGKDAIVQWIISKA HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHHHHCHHHHHHHHHHHH ESLSDLLEVHVLAREGGLWSAESRDNLMVVPLFETIADLDDAPAIMAAYFALPEIAPHVA HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ARGHQEVMIGYSDSNKDGGYLTSTWGLHQASAALTPVFEQADTAMQLFHGRGGAVGRGGG HCCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SAFAAIRAQPAGTVQGRIRITEQGEVIAAKYGTIDSAATNLEAMVSASLLASLEPEAMGA CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHCCH KEAERFTAAMDALSDTAFAAYRGLVYDTPAFRDFFRAMTPIAEIATLKIGSRPSSRTKST HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHH AIEDLRAIPWVFSWAQARTMLPGWYGTGEAFAAFADKALLTDMAASWPFFAALLGNMEMV HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEE LAKSDMGIAARYAGLASQIDGHDAIFGRIKDGWNRAHDGLLEITGQTRLLEKNPALEASI EEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCEEEE RLRLPYIEPLNLLQIELMKRHRAGETDPRIAEGIQLTINAIATALRNSG EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA