| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488548
Identifier: 103488548
GI number: 103488548
Start: 3221972
End: 3223138
Strand: Reverse
Name: 103488548
Synonym: Sala_3072
Alternate gene names: NA
Gene position: 3223138-3221972 (Counterclockwise)
Preceding gene: 103488549
Following gene: 103488547
Centisome position: 96.35
GC content: 64.1
Gene sequence:
>1167_bases TTGCCAGCTTGCTGGCTTAGTCGCAGCGGGTGGGGGCCATCGGCCTTGCGCAAGGCCGATGGCCCCCACCCCAACCCCTC CCCTAAAGGGGAGGGGCTTATGACTCTTGACGCCCAAAAGGCCTTCAGCGGCACCGTCGCGCCCGAAGGGGCGGACGTGC TCGACGAAGCGAAGCTGACCGCGTGGATGGAAACGAATGTCGAGGGGTTCAAAGGCCCGCTGACGCAGAGCAAGTTCGCC GGCGGCCAGTCGAACCCGACCTACAAGATCTCGTCGCCATCGGGAAATTATGTCCTGCGCCGCAAGCCCTTTGGCCCGCT GCTCCCCTCCGCCCATGCGGTCGACCGCGAATATAAGGTGCAGGCCGGCCTCTATAAGATGGGCTTTCCCGTCGCGCGCC AATATGGGCTTTGCACCGACGACAATGTGATCGGCAGCTGGTTCTATGTGATGGCGATGGTCGATGGGCAGACGATCTGG GACGGGTCGATGCCCGGATCGACGCCGGAGAACCGCCGCGCGACCTATGAGGCGATGATCGACACGCTCGCCGCGCTGCA CAAGGTCGACGTCGAGGCGGCGGGGCTGTCCGATTTCGGCAAGCCCGGCAATTATTTCGGGCGCCAGGTCGATCGCTGGA CGAAGCAGTACAAGCTCGCCGAGACCGAGACGATGGACGAGATGGAACGGCTGATCGCCTTTCTGCCTGCCACATTGCCC GAACAGACGCGCACCAGCGTCGTCCACGGCGATTACCGCATCGACAACATGATCTATGCCAAGGACCGGCCAGAGGTTCT GGCGGTGCTCGACTGGGAGCTGTCGACGCTGGGCGATCCGCTCGCCGATTTCACCTATGTCGCGATGGCGTGGGTGACGG AAAATGGCGGGCGTTCAGGGGTCATGGACCTCGACCGCGCCGCGCTCGGCATCCCCGAACTCGACGAGATGGTCCAGCGC TATTGCGCCGCCACCGGCCGCGACGGGGTGCCCGACATGAACTGGTATTTCGCCTATAATTTCTTCCGCCTCGCCGGGAT CATGCAGGGTATCAAGAAGCGCGTCATCGACGGCACCGCCTCGTCGGCTCATGCCAAGGCGATGTCGGAGCGCGTGCAGC CGCTGGCCGCACGCGCGTGGGACTTTGCACGAAAGGCCGGGGCATGA
Upstream 100 bases:
>100_bases AAGATGAAGAAGGGCGACGCCGCACGATCGGTGATCGTATTCGACCAATGATGGCGGGGCGCATCTCTTCGCCCTCCCCT TCAGGGGAGGGCAGCGAGAC
Downstream 100 bases:
>100_bases GCCTGTTCGACATGACCGGCCAGGTCGCGCTGATCACCGGATCGTCGCGCGGCATCGGCAAGGCGACGGCGGAAGCGATG GCCGAACAGGGCGCGAAGGT
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase; Phosphotransferase Family Protein; Phosphotransferase Family Protein; Acyl-CoA Dehydrogenase; Phosphotransferase Family; Acyl-Co A Dehydrogenase; Acyl-CoA Dehydrogenase FadE; Tyrosine Protein Kinase/Aminoglycoside Phosphotransferase; Acyl-Coa Dehydrogenase Fade; Acyl-CoA Dehydrogenase Family Member; Acyl-CoA Dehydrogenase Domain-Containing Protein
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MPACWLSRSGWGPSALRKADGPHPNPSPKGEGLMTLDAQKAFSGTVAPEGADVLDEAKLTAWMETNVEGFKGPLTQSKFA GGQSNPTYKISSPSGNYVLRRKPFGPLLPSAHAVDREYKVQAGLYKMGFPVARQYGLCTDDNVIGSWFYVMAMVDGQTIW DGSMPGSTPENRRATYEAMIDTLAALHKVDVEAAGLSDFGKPGNYFGRQVDRWTKQYKLAETETMDEMERLIAFLPATLP EQTRTSVVHGDYRIDNMIYAKDRPEVLAVLDWELSTLGDPLADFTYVAMAWVTENGGRSGVMDLDRAALGIPELDEMVQR YCAATGRDGVPDMNWYFAYNFFRLAGIMQGIKKRVIDGTASSAHAKAMSERVQPLAARAWDFARKAGA
Sequences:
>Translated_388_residues MPACWLSRSGWGPSALRKADGPHPNPSPKGEGLMTLDAQKAFSGTVAPEGADVLDEAKLTAWMETNVEGFKGPLTQSKFA GGQSNPTYKISSPSGNYVLRRKPFGPLLPSAHAVDREYKVQAGLYKMGFPVARQYGLCTDDNVIGSWFYVMAMVDGQTIW DGSMPGSTPENRRATYEAMIDTLAALHKVDVEAAGLSDFGKPGNYFGRQVDRWTKQYKLAETETMDEMERLIAFLPATLP EQTRTSVVHGDYRIDNMIYAKDRPEVLAVLDWELSTLGDPLADFTYVAMAWVTENGGRSGVMDLDRAALGIPELDEMVQR YCAATGRDGVPDMNWYFAYNFFRLAGIMQGIKKRVIDGTASSAHAKAMSERVQPLAARAWDFARKAGA >Mature_387_residues PACWLSRSGWGPSALRKADGPHPNPSPKGEGLMTLDAQKAFSGTVAPEGADVLDEAKLTAWMETNVEGFKGPLTQSKFAG GQSNPTYKISSPSGNYVLRRKPFGPLLPSAHAVDREYKVQAGLYKMGFPVARQYGLCTDDNVIGSWFYVMAMVDGQTIWD GSMPGSTPENRRATYEAMIDTLAALHKVDVEAAGLSDFGKPGNYFGRQVDRWTKQYKLAETETMDEMERLIAFLPATLPE QTRTSVVHGDYRIDNMIYAKDRPEVLAVLDWELSTLGDPLADFTYVAMAWVTENGGRSGVMDLDRAALGIPELDEMVQRY CAATGRDGVPDMNWYFAYNFFRLAGIMQGIKKRVIDGTASSAHAKAMSERVQPLAARAWDFARKAGA
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=318, Percent_Identity=47.7987421383648, Blast_Score=305, Evalue=5e-83, Organism=Homo sapiens, GI211971008, Length=318, Percent_Identity=47.7987421383648, Blast_Score=305, Evalue=5e-83, Organism=Homo sapiens, GI38505218, Length=345, Percent_Identity=35.6521739130435, Blast_Score=244, Evalue=7e-65, Organism=Caenorhabditis elegans, GI17562446, Length=322, Percent_Identity=39.1304347826087, Blast_Score=229, Evalue=2e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42666; Mature: 42535
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPACWLSRSGWGPSALRKADGPHPNPSPKGEGLMTLDAQKAFSGTVAPEGADVLDEAKLT CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHH AWMETNVEGFKGPLTQSKFAGGQSNPTYKISSPSGNYVLRRKPFGPLLPSAHAVDREYKV HHHHCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCHHCCCHHHH QAGLYKMGFPVARQYGLCTDDNVIGSWFYVMAMVDGQTIWDGSMPGSTPENRRATYEAMI HHCHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHH DTLAALHKVDVEAAGLSDFGKPGNYFGRQVDRWTKQYKLAETETMDEMERLIAFLPATLP HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EQTRTSVVHGDYRIDNMIYAKDRPEVLAVLDWELSTLGDPLADFTYVAMAWVTENGGRSG HHHHHHEEECCEEECCEEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHEEECCCCCCC VMDLDRAALGIPELDEMVQRYCAATGRDGVPDMNWYFAYNFFRLAGIMQGIKKRVIDGTA CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC SSAHAKAMSERVQPLAARAWDFARKAGA CHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PACWLSRSGWGPSALRKADGPHPNPSPKGEGLMTLDAQKAFSGTVAPEGADVLDEAKLT CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHH AWMETNVEGFKGPLTQSKFAGGQSNPTYKISSPSGNYVLRRKPFGPLLPSAHAVDREYKV HHHHCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCHHCCCHHHH QAGLYKMGFPVARQYGLCTDDNVIGSWFYVMAMVDGQTIWDGSMPGSTPENRRATYEAMI HHCHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHH DTLAALHKVDVEAAGLSDFGKPGNYFGRQVDRWTKQYKLAETETMDEMERLIAFLPATLP HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EQTRTSVVHGDYRIDNMIYAKDRPEVLAVLDWELSTLGDPLADFTYVAMAWVTENGGRSG HHHHHHEEECCEEECCEEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHEEECCCCCCC VMDLDRAALGIPELDEMVQRYCAATGRDGVPDMNWYFAYNFFRLAGIMQGIKKRVIDGTA CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC SSAHAKAMSERVQPLAARAWDFARKAGA CHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA