Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yfeW [C]

Identifier: 103488545

GI number: 103488545

Start: 3219183

End: 3220385

Strand: Reverse

Name: yfeW [C]

Synonym: Sala_3069

Alternate gene names: 103488545

Gene position: 3220385-3219183 (Counterclockwise)

Preceding gene: 103488546

Following gene: 103488544

Centisome position: 96.27

GC content: 64.75

Gene sequence:

>1203_bases
ATGGGTCACGGTTTCGACACGGCGCGGCTCGACCGCATTCCGGCTTTTCTCGAAGCCAAATATGTCAGCACCGGCCGTCT
GCCGCACGCCGCGACTTTGGTGTCGCGGCGCGGCGAGATCGCGCACCAGTCGGGCATCGGCGAGGCGCGGCCGGGCGAAG
CGCTGAAAGACGATGCGATCTTTCGCATCGCGAGCATGACCAAGCCGATCACCAGCATCGCCTTCATGATGCTGGTCGAA
GAGGGCAAGGTCGCGCTGTCCGATCCGCTCGTGAAGTTCTGCCCCGAGTTCAGGGACACCGGCGTGTTCGTCGCGGGCGG
CGGCAATGTGCCGTTCCTGACGCGCCCGCCAGCACAGCCGGTCCGCATGGTCGACCTGCTGCGGCATACCGCGGGCCTGA
CCTATGGCTTTCAGGAGCGTACCCCGGTCGATGCCGCTTATCGCAAGGCACGGATCGACGATTTCGACGCCGATTATACG
ATGGACAGCTTCATCGCCGCGCTCGCGAAAATCCCGCTGCAGTTCGACCCCGGCGCGCACTGGAATTATTCGATGGCGAC
CGACGTGCTCGGCGCGGTGATCGAGCGCATCGAGGGCAAGCCTTTTGCAGAGGTTTTGCAGGAGCGCATCTTCGGCCCGC
TGGGCATGGTCGATACGGGATTCAAGGTGGCTGCCGACCAGCAGCACCGGCTCACCGACGCCCATGCCTTTCACCCGAAA
GACAGGATGCAGGGCTTTGACGAAGGCGCACGCAGCCGCTGGGCGAAGGACAGGAGCTTTCATTCGGGCGGCGGCGGGCT
TGCCTCGACGCTCCACGACTATCACCGTTTCTGCCTGATGCTGCTCGGCGGCGGCAAGCTGGGCGATGTGCGGATCGTCA
GCCGCAAGACGCTCGATCTGATGACCGCGAACCACCTCGTCGGCGGCGGCGACCTGACGCAGCACAGCGTCGGCGTGTTC
AGCGAGGACGAGAATGCCGGGATCGGTTTCGGGCTCGGCTTCGCGGTCACGCTCGATCCGGCGCGCGCGGGCATCCCCGG
CTCGGCGGGCGATTTCTACTGGGGCGGCATGTTCTCGACCGGCTTCTTCGTCGATCCGGTCGAAGAGATTTGCATGGTGT
TCATGACCCAGCTCATGCCCTCCTCCACCTATCCCGTGCGGCGCGAGGTCAAGACGCTGATCCACGCCGCGATTGATGAC
TGA

Upstream 100 bases:

>100_bases
TATGTCAACGGACAGGCGATTGCGGTTGACGGCGGACTGACCAGCTCGCATCCGGTGACGCGCCAGTTGCTTGGCCAGAC
TTCGCATTGACAGGATAGAT

Downstream 100 bases:

>100_bases
AGATGCAACACCACCTCTCCGCTCGCATCGAGCGAAGTCGAGACACCCATCGAACGGGCGCCTAGCCCGAGGGGCATCTC
GACTTCGCTCGATGCGAGCG

Product: beta-lactamase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVE
EGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYT
MDSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK
DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVF
SEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD

Sequences:

>Translated_400_residues
MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVE
EGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYT
MDSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK
DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVF
SEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD
>Mature_399_residues
GHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVEE
GKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTM
DSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPKD
RMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVFS
EDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082101, Length=408, Percent_Identity=24.2647058823529, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786574, Length=192, Percent_Identity=32.2916666666667, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 43586; Mature: 43455

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAI
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH
FRIASMTKPITSIAFMMLVEEGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQP
HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCHHHCCCCEEEECCCCCCCCCCCCCCH
VRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTMDSFIAALAKIPLQFDPGAH
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEECCCCC
WNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHCCCHHCCCCH
DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDL
HHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
MTANHLVGGGDLTQHSVGVFSEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFST
HHHCCEECCCCCCCCCCCCEECCCCCCCEEECCEEEEECHHHCCCCCCCCCCCCCCCCCC
GFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD
CCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAI
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH
FRIASMTKPITSIAFMMLVEEGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQP
HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCHHHCCCCEEEECCCCCCCCCCCCCCH
VRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTMDSFIAALAKIPLQFDPGAH
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEECCCCC
WNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHCCCHHCCCCH
DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDL
HHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
MTANHLVGGGDLTQHSVGVFSEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFST
HHHCCEECCCCCCCCCCCCEECCCCCCCEEECCEEEEECHHHCCCCCCCCCCCCCCCCCC
GFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD
CCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]