| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yfeW [C]
Identifier: 103488545
GI number: 103488545
Start: 3219183
End: 3220385
Strand: Reverse
Name: yfeW [C]
Synonym: Sala_3069
Alternate gene names: 103488545
Gene position: 3220385-3219183 (Counterclockwise)
Preceding gene: 103488546
Following gene: 103488544
Centisome position: 96.27
GC content: 64.75
Gene sequence:
>1203_bases ATGGGTCACGGTTTCGACACGGCGCGGCTCGACCGCATTCCGGCTTTTCTCGAAGCCAAATATGTCAGCACCGGCCGTCT GCCGCACGCCGCGACTTTGGTGTCGCGGCGCGGCGAGATCGCGCACCAGTCGGGCATCGGCGAGGCGCGGCCGGGCGAAG CGCTGAAAGACGATGCGATCTTTCGCATCGCGAGCATGACCAAGCCGATCACCAGCATCGCCTTCATGATGCTGGTCGAA GAGGGCAAGGTCGCGCTGTCCGATCCGCTCGTGAAGTTCTGCCCCGAGTTCAGGGACACCGGCGTGTTCGTCGCGGGCGG CGGCAATGTGCCGTTCCTGACGCGCCCGCCAGCACAGCCGGTCCGCATGGTCGACCTGCTGCGGCATACCGCGGGCCTGA CCTATGGCTTTCAGGAGCGTACCCCGGTCGATGCCGCTTATCGCAAGGCACGGATCGACGATTTCGACGCCGATTATACG ATGGACAGCTTCATCGCCGCGCTCGCGAAAATCCCGCTGCAGTTCGACCCCGGCGCGCACTGGAATTATTCGATGGCGAC CGACGTGCTCGGCGCGGTGATCGAGCGCATCGAGGGCAAGCCTTTTGCAGAGGTTTTGCAGGAGCGCATCTTCGGCCCGC TGGGCATGGTCGATACGGGATTCAAGGTGGCTGCCGACCAGCAGCACCGGCTCACCGACGCCCATGCCTTTCACCCGAAA GACAGGATGCAGGGCTTTGACGAAGGCGCACGCAGCCGCTGGGCGAAGGACAGGAGCTTTCATTCGGGCGGCGGCGGGCT TGCCTCGACGCTCCACGACTATCACCGTTTCTGCCTGATGCTGCTCGGCGGCGGCAAGCTGGGCGATGTGCGGATCGTCA GCCGCAAGACGCTCGATCTGATGACCGCGAACCACCTCGTCGGCGGCGGCGACCTGACGCAGCACAGCGTCGGCGTGTTC AGCGAGGACGAGAATGCCGGGATCGGTTTCGGGCTCGGCTTCGCGGTCACGCTCGATCCGGCGCGCGCGGGCATCCCCGG CTCGGCGGGCGATTTCTACTGGGGCGGCATGTTCTCGACCGGCTTCTTCGTCGATCCGGTCGAAGAGATTTGCATGGTGT TCATGACCCAGCTCATGCCCTCCTCCACCTATCCCGTGCGGCGCGAGGTCAAGACGCTGATCCACGCCGCGATTGATGAC TGA
Upstream 100 bases:
>100_bases TATGTCAACGGACAGGCGATTGCGGTTGACGGCGGACTGACCAGCTCGCATCCGGTGACGCGCCAGTTGCTTGGCCAGAC TTCGCATTGACAGGATAGAT
Downstream 100 bases:
>100_bases AGATGCAACACCACCTCTCCGCTCGCATCGAGCGAAGTCGAGACACCCATCGAACGGGCGCCTAGCCCGAGGGGCATCTC GACTTCGCTCGATGCGAGCG
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVE EGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYT MDSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVF SEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD
Sequences:
>Translated_400_residues MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVE EGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYT MDSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVF SEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD >Mature_399_residues GHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAIFRIASMTKPITSIAFMMLVEE GKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQPVRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTM DSFIAALAKIPLQFDPGAHWNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPKD RMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDLMTANHLVGGGDLTQHSVGVFS EDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFSTGFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=408, Percent_Identity=24.2647058823529, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786574, Length=192, Percent_Identity=32.2916666666667, Blast_Score=86, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 43586; Mature: 43455
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAI CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH FRIASMTKPITSIAFMMLVEEGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQP HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCHHHCCCCEEEECCCCCCCCCCCCCCH VRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTMDSFIAALAKIPLQFDPGAH HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEECCCCC WNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHCCCHHCCCCH DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDL HHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH MTANHLVGGGDLTQHSVGVFSEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFST HHHCCEECCCCCCCCCCCCEECCCCCCCEEECCEEEEECHHHCCCCCCCCCCCCCCCCCC GFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD CCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure GHGFDTARLDRIPAFLEAKYVSTGRLPHAATLVSRRGEIAHQSGIGEARPGEALKDDAI CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH FRIASMTKPITSIAFMMLVEEGKVALSDPLVKFCPEFRDTGVFVAGGGNVPFLTRPPAQP HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCHHHCCCCEEEECCCCCCCCCCCCCCH VRMVDLLRHTAGLTYGFQERTPVDAAYRKARIDDFDADYTMDSFIAALAKIPLQFDPGAH HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEECCCCC WNYSMATDVLGAVIERIEGKPFAEVLQERIFGPLGMVDTGFKVAADQQHRLTDAHAFHPK CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHCCCHHCCCCH DRMQGFDEGARSRWAKDRSFHSGGGGLASTLHDYHRFCLMLLGGGKLGDVRIVSRKTLDL HHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH MTANHLVGGGDLTQHSVGVFSEDENAGIGFGLGFAVTLDPARAGIPGSAGDFYWGGMFST HHHCCEECCCCCCCCCCCCEECCCCCCCEEECCEEEEECHHHCCCCCCCCCCCCCCCCCC GFFVDPVEEICMVFMTQLMPSSTYPVRREVKTLIHAAIDD CCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]