BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is fabG [H]

Identifier: 103488546

GI number: 103488546

Start: 3220396

End: 3221199

Strand: Reverse

Name: fabG [H]

Synonym: Sala_3070

Alternate gene names: 103488546

Gene position: 3221199-3220396 (Counterclockwise)

Preceding gene: 103488547

Following gene: 103488545

Centisome position: 96.29

GC content: 67.04

Gene sequence:

>804_bases
ATGGGCGCGTTGGACGGCAAGGTTGCGATCATCACGGGCGCGGGCAGCGGCATCGGCCGCGCGAGCGCGCTGCGGTTTGC
TGCCGAAGGGGCGAAGCTCGTCATCGGCGACAAGAGCGCGGCGGTGCACGAAACCGCGCAAATGGTGAAGGATGCGGGGG
GCGAGGCGATCGCGATGGAAATCGACGCGGGCGTCGAAGCCGATGTCGCCGCGATGGTCGCGACCGCAAAGGAAAGCTTC
GGCGGGCTCGACGTCGCCTTCGCCAACGCCGGGATCATCGGCGACATGGGCGGCATTTTCGATTTCGACCCCGCGGCCTG
GGCCGAAACTTTGCGCGTCAACCTGATCGGCCCCGCGCTGATGGTGAAACATGCCGGCAAGGCGATGGTCGATCAGGGGC
GCGGCGGCGCGATCGTGCTGACCGCGAGCGTCGCGGGGATCAATTCGGGCGCGGGTCCGGGCGCCTATTCGGCGTCGAAG
GCGGGGGTCATCAACCTCGCCAAGGTCGCCGCGCAGCAACTGACCGGCAGCGGCGTGCGCGTCAACGCCATCTGCCCCGG
CCTGACCGAAACGGGAATGACCAAGCCGACCTTCGACTATGCGCGCGCCAAGGAGGTGACCCACAAGCTCGGCCAGCTCA
ATCCGCTGAAACGCGCGGCACAACCCGAGGAGCTCGCCAATGTCGCGCTGTTCCTCGCGAGCGATCAGGCGAGCTATGTC
AACGGACAGGCGATTGCGGTTGACGGCGGACTGACCAGCTCGCATCCGGTGACGCGCCAGTTGCTTGGCCAGACTTCGCA
TTGA

Upstream 100 bases:

>100_bases
TCGCGGGCGCCGCGGTGTTCCTCGCCAGCAAGGCGGGGGCTTTTACCACCGGCCAGACCATCGTTTGCGATGGCGGGGCC
ACGATTTCGGGAGGCGCATG

Downstream 100 bases:

>100_bases
CAGGATAGATATGGGTCACGGTTTCGACACGGCGCGGCTCGACCGCATTCCGGCTTTTCTCGAAGCCAAATATGTCAGCA
CCGGCCGTCTGCCGCACGCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MGALDGKVAIITGAGSGIGRASALRFAAEGAKLVIGDKSAAVHETAQMVKDAGGEAIAMEIDAGVEADVAAMVATAKESF
GGLDVAFANAGIIGDMGGIFDFDPAAWAETLRVNLIGPALMVKHAGKAMVDQGRGGAIVLTASVAGINSGAGPGAYSASK
AGVINLAKVAAQQLTGSGVRVNAICPGLTETGMTKPTFDYARAKEVTHKLGQLNPLKRAAQPEELANVALFLASDQASYV
NGQAIAVDGGLTSSHPVTRQLLGQTSH

Sequences:

>Translated_267_residues
MGALDGKVAIITGAGSGIGRASALRFAAEGAKLVIGDKSAAVHETAQMVKDAGGEAIAMEIDAGVEADVAAMVATAKESF
GGLDVAFANAGIIGDMGGIFDFDPAAWAETLRVNLIGPALMVKHAGKAMVDQGRGGAIVLTASVAGINSGAGPGAYSASK
AGVINLAKVAAQQLTGSGVRVNAICPGLTETGMTKPTFDYARAKEVTHKLGQLNPLKRAAQPEELANVALFLASDQASYV
NGQAIAVDGGLTSSHPVTRQLLGQTSH
>Mature_266_residues
GALDGKVAIITGAGSGIGRASALRFAAEGAKLVIGDKSAAVHETAQMVKDAGGEAIAMEIDAGVEADVAAMVATAKESFG
GLDVAFANAGIIGDMGGIFDFDPAAWAETLRVNLIGPALMVKHAGKAMVDQGRGGAIVLTASVAGINSGAGPGAYSASKA
GVINLAKVAAQQLTGSGVRVNAICPGLTETGMTKPTFDYARAKEVTHKLGQLNPLKRAAQPEELANVALFLASDQASYVN
GQAIAVDGGLTSSHPVTRQLLGQTSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=32.0158102766798, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=33.4630350194552, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=31.7269076305221, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=30.6772908366534, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=30.7086614173228, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=30.2325581395349, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=29.6577946768061, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=31.7948717948718, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI4504505, Length=250, Percent_Identity=31.6, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI4758504, Length=264, Percent_Identity=32.1969696969697, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=30.8457711442786, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI142976729, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI83715985, Length=265, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI210032110, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI25282469, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4503301, Length=261, Percent_Identity=30.2681992337165, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=29.3617021276596, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI209862901, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI19923983, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=34.6007604562738, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=34.2629482071713, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=31.7269076305221, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=31.8548387096774, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=34.6774193548387, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=37.7431906614786, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.968253968254, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=31.6, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=29.0196078431373, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=30.4347826086957, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=30.3149606299213, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787526, Length=199, Percent_Identity=26.1306532663317, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=29.2307692307692, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787820, Length=264, Percent_Identity=25, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=36.5461847389558, Blast_Score=127, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=30.9803921568627, Blast_Score=106, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=31.6793893129771, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.203007518797, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.4393939393939, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=31.6, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=28.8, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=31.1111111111111, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=294, Percent_Identity=31.9727891156463, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=32.3308270676692, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=30.9433962264151, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=31.4606741573034, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17568967, Length=218, Percent_Identity=33.4862385321101, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=265, Percent_Identity=30.9433962264151, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=33.206106870229, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=32.2344322344322, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=30.7407407407407, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.824427480916, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=292, Percent_Identity=30.8219178082192, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=30.8823529411765, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=29.6577946768061, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=284, Percent_Identity=29.9295774647887, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.1746031746032, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=29.5719844357977, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=30.4832713754647, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=30.6513409961686, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=26.9076305220884, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=31.9066147859922, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=29.8429319371728, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=246, Percent_Identity=28.0487804878049, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=280, Percent_Identity=27.5, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=280, Percent_Identity=27.5, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=245, Percent_Identity=31.0204081632653, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=27.5590551181102, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=39.6078431372549, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=31.5175097276265, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=32.9501915708812, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=33.8461538461538, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28571526, Length=265, Percent_Identity=33.5849056603774, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=30.859375, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357041, Length=265, Percent_Identity=32.0754716981132, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI18859837, Length=203, Percent_Identity=34.9753694581281, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24641232, Length=219, Percent_Identity=27.3972602739726, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=30.46875, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 26750; Mature: 26619

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALDGKVAIITGAGSGIGRASALRFAAEGAKLVIGDKSAAVHETAQMVKDAGGEAIAME
CCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
IDAGVEADVAAMVATAKESFGGLDVAFANAGIIGDMGGIFDFDPAAWAETLRVNLIGPAL
ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCHHHHHHHEEEEEECHHH
MVKHAGKAMVDQGRGGAIVLTASVAGINSGAGPGAYSASKAGVINLAKVAAQQLTGSGVR
HHHHCCHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
VNAICPGLTETGMTKPTFDYARAKEVTHKLGQLNPLKRAAQPEELANVALFLASDQASYV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHEEEEEEECCCCCCC
NGQAIAVDGGLTSSHPVTRQLLGQTSH
CCEEEEEECCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
GALDGKVAIITGAGSGIGRASALRFAAEGAKLVIGDKSAAVHETAQMVKDAGGEAIAME
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
IDAGVEADVAAMVATAKESFGGLDVAFANAGIIGDMGGIFDFDPAAWAETLRVNLIGPAL
ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCHHHHHHHEEEEEECHHH
MVKHAGKAMVDQGRGGAIVLTASVAGINSGAGPGAYSASKAGVINLAKVAAQQLTGSGVR
HHHHCCHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
VNAICPGLTETGMTKPTFDYARAKEVTHKLGQLNPLKRAAQPEELANVALFLASDQASYV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHEEEEEEECCCCCCC
NGQAIAVDGGLTSSHPVTRQLLGQTSH
CCEEEEEECCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]