| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488520
Identifier: 103488520
GI number: 103488520
Start: 3194476
End: 3195258
Strand: Direct
Name: 103488520
Synonym: Sala_3044
Alternate gene names: NA
Gene position: 3194476-3195258 (Clockwise)
Preceding gene: 103488518
Following gene: 103488521
Centisome position: 95.5
GC content: 66.41
Gene sequence:
>783_bases ATGGCGGCAACCAGCGATCCGGAAAATGTGGCGCGCGCATTTATCGACGCGCGTGCGGGAAAGACACCGCTTACCGTCTA TCCCGGCGCGTTTCCGCAAACGATGGCGGAGGCCTATGCGATCCAGGATCGCGCGATCGCCCTCGACGGGCGGCGCGTCG GCGGGTGGAAGGTCGGACGAATCGCCCCCGAACTCGTCGACCGCTTTGGCGGCAATCGCCTGACCGGCCCGATCTTCGCC GACGAAATCGTCGACGGTGCCGCCGATCCGGCGATGCCGGTCTATGCCGACGGCTTCGCCGCGGCCGAGGCAGAGGTGTT GCTCTGTTTCGGCGAGGTGGGCCCGCGCGACTATAGCATCGACAGCGTGAAGCAGTGCATCGCCGACGTGCGCACGGGGA TCGAGATCGCTAGCTCGCCTTTCCCCGAAATCAACCGCCACGGTCCCGCAGTGACGGCGTCCGACTATGGCAACAACAAG GGGCTGATCCTCGGCCCGTCGATCCCCGACTGGCAGGATGCCGACCTCATCCACATGCCCGTCGAGATGTTCGTCGATGG CGCGCGCGTCGGCGCCGGGACGATGGAGGCGATGCTCGACGGCCCGTTCGGATCGGCGCTGTTCCTGATCGACACATTGC GCGCGCGCGGCATTGCAATTGCGCCCGGCACCTGGGTGTCGGCGGGCGCGATCACCGGTATTCACGAGGTCCGGCCCGGC CAGCGGGCCGAAGCGCTGTTCGACGGAAAGATCCGCGTCGGCTGCACGATCACAAGTTATTAG
Upstream 100 bases:
>100_bases GTCGCCGTCGCCGATACGGATCGCGCGATTCATCGGATATTCGCTTGCCTTTGACACCGGTGTCTCTTACACCGCTTCGC GGAAGAGGGAAATGGGAAAG
Downstream 100 bases:
>100_bases AAGCGCAACACGGGAGAGGATGATGGCACAGGCAATCGCAGACAGGGGTGCGGCGGTGCCGGTGCCCCGTTCGGGCCGCT ACCGCTGGCTGATCGTCGCG
Product: 2-keto-4-pentenoate hydratase, putative
Products: 2-oxopent-4-enoate; H2O
Alternate protein names: 2-Keto-4-Pentenoate Hydratase-Like Protein; Fumarylacetoacetate Hydrolase; 2-Keto-4-Pentenoate Hydratase Family Protein
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFA DEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNK GLILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG QRAEALFDGKIRVGCTITSY
Sequences:
>Translated_260_residues MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFA DEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNK GLILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG QRAEALFDGKIRVGCTITSY >Mature_259_residues AATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFAD EIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKG LILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPGQ RAEALFDGKIRVGCTITSY
Specific function: Unknown
COG id: COG3971
COG function: function code Q; 2-keto-4-pentenoate hydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.2.1.80
Molecular weight: Translated: 27392; Mature: 27261
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGR CCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCCEECCEEHHH IAPELVDRFGGNRLTGPIFADEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSI HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCH DSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKGLILGPSIPDWQDADLIHMP HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEECC VEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCHHCCHHHCCCC QRAEALFDGKIRVGCTITSY CHHHHEECCEEEEEEEEECC >Mature Secondary Structure AATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGR CCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCCEECCEEHHH IAPELVDRFGGNRLTGPIFADEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSI HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCH DSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKGLILGPSIPDWQDADLIHMP HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEECC VEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCHHCCHHHCCCC QRAEALFDGKIRVGCTITSY CHHHHEECCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 4-hydroxy-2-oxopentanoate
Specific reaction: 4-hydroxy-2-oxopentanoate = 2-oxopent-4-enoate + H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA