| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is exuT [H]
Identifier: 103488521
GI number: 103488521
Start: 3195281
End: 3196588
Strand: Direct
Name: exuT [H]
Synonym: Sala_3045
Alternate gene names: 103488521
Gene position: 3195281-3196588 (Clockwise)
Preceding gene: 103488520
Following gene: 103488522
Centisome position: 95.52
GC content: 62.84
Gene sequence:
>1308_bases ATGGCACAGGCAATCGCAGACAGGGGTGCGGCGGTGCCGGTGCCCCGTTCGGGCCGCTACCGCTGGCTGATCGTCGCGGT GCTCTTCGCCGCGACCACCGTCAACTATATCGACCGCACCATGCTCGGCCTGCTCGCGCCGACGCTTGGGCAGGAGCTGG GGTGGAGCGAGAATGACTATGGCAACATCGTCACCGCATTCCAGGCGGCCTATGCACTCGGCTTTCTGTTCATGGGCTGG CTGATCGACCGCTTCGGACCCAAGATCGGCTATGCGATCGCGATCGGCATCTGGACGGTCGGCCATGTCGCGCACGGCTT TGCGTCGTCGGTCGTCTCCTTCATGCTTGCGCGCGTCATACTGGGCGTCGGCGAAGCGGGGCATTTTCCCTCGGTCGTCC GCGCGTCGAGCGAATGGTTCCCGCAAAAGGAACGCTCCTATGCGATCGGCTGGGTCAATAGCGCGACGACGATCGGCGTC ATCCTGACCGCGCCGACCGTCGCGCTCTTCATGCGCGTGCTCGGCTTCGATTGGCGTGAAACCTTCATCTATACCGGCAT TTTCGGCGTCGTCCTGCTGCTGCTCTGGCTCTGGCTCTACAGCAACCCGCGCGAAAGCGGGAAGGTCAGCGAGGCCGAAC TGGCGTGGATCGAGCATGACCCGCCCGAACAGGTCGAACGCATCGGCTGGAGCCGGATCGTCACCAAGCGCGAAGCCTGG GCCTTTGCGATGGCCAAGTTTCTGACCGACCCGGTGTGGTTCCTGATGCTCTTCTGGCTGCCCAAATATTTCAGCTCGAC TTATGATGTGGACCTCAAGATCGTGCTGCTGCCGATGATCATCATGTATCTGCTCTCCGATGTCGGCAGCATCCTCGGCG GCTGGGTGTCGTCGAAGCTGATCCAGACCGGCCACAGCGTCAATTTTGCGCGCAAGGTGACGATGATCGGCGCGGGCCTT TGCGTATTGCCGCTCTTGTTCGTGACGGGGCTCGAAAATATGTGGCTCGCGGTCGTGCTGATCGGCATCGCGCTCGCGGG GCATCAGGCCTTTTCCTCGACGATCCTGTCGATCCCGCCCGACATGTTTCCGAAACGCGCGGTCGGATCGGTAATCGGGC TCGGCGGTTTCATGGGCGGCGTCGGCGGCATGATCATGGCGAAGTCGACGGGGCTTGTGCTCGATGCGACGGGGGGCAAT TACACCCTCATCTTCGCCGCCTGCACCACCGTCTATTTCCTCGCGGTGCTCGCGGTGCATATCCTCAGCCCGCGCCTCGC GCCGGTCAGCGTCGAAGGCGCGAAATAG
Upstream 100 bases:
>100_bases GAGGTCCGGCCCGGCCAGCGGGCCGAAGCGCTGTTCGACGGAAAGATCCGCGTCGGCTGCACGATCACAAGTTATTAGAA GCGCAACACGGGAGAGGATG
Downstream 100 bases:
>100_bases GCCCGTGCCGCGTCCGCTGTACCTGTCACCCGACCGCCTCTTCCCGTCCGACCCGGCGCAGCGCGACATCGCGCGCCGGC TGTATAAGGCGGTCGCAGGT
Product: major facilitator transporter
Products: galacturonate [Cytoplasm]; Proton [Cytoplasm]; glucuronate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MAQAIADRGAAVPVPRSGRYRWLIVAVLFAATTVNYIDRTMLGLLAPTLGQELGWSENDYGNIVTAFQAAYALGFLFMGW LIDRFGPKIGYAIAIGIWTVGHVAHGFASSVVSFMLARVILGVGEAGHFPSVVRASSEWFPQKERSYAIGWVNSATTIGV ILTAPTVALFMRVLGFDWRETFIYTGIFGVVLLLLWLWLYSNPRESGKVSEAELAWIEHDPPEQVERIGWSRIVTKREAW AFAMAKFLTDPVWFLMLFWLPKYFSSTYDVDLKIVLLPMIIMYLLSDVGSILGGWVSSKLIQTGHSVNFARKVTMIGAGL CVLPLLFVTGLENMWLAVVLIGIALAGHQAFSSTILSIPPDMFPKRAVGSVIGLGGFMGGVGGMIMAKSTGLVLDATGGN YTLIFAACTTVYFLAVLAVHILSPRLAPVSVEGAK
Sequences:
>Translated_435_residues MAQAIADRGAAVPVPRSGRYRWLIVAVLFAATTVNYIDRTMLGLLAPTLGQELGWSENDYGNIVTAFQAAYALGFLFMGW LIDRFGPKIGYAIAIGIWTVGHVAHGFASSVVSFMLARVILGVGEAGHFPSVVRASSEWFPQKERSYAIGWVNSATTIGV ILTAPTVALFMRVLGFDWRETFIYTGIFGVVLLLLWLWLYSNPRESGKVSEAELAWIEHDPPEQVERIGWSRIVTKREAW AFAMAKFLTDPVWFLMLFWLPKYFSSTYDVDLKIVLLPMIIMYLLSDVGSILGGWVSSKLIQTGHSVNFARKVTMIGAGL CVLPLLFVTGLENMWLAVVLIGIALAGHQAFSSTILSIPPDMFPKRAVGSVIGLGGFMGGVGGMIMAKSTGLVLDATGGN YTLIFAACTTVYFLAVLAVHILSPRLAPVSVEGAK >Mature_434_residues AQAIADRGAAVPVPRSGRYRWLIVAVLFAATTVNYIDRTMLGLLAPTLGQELGWSENDYGNIVTAFQAAYALGFLFMGWL IDRFGPKIGYAIAIGIWTVGHVAHGFASSVVSFMLARVILGVGEAGHFPSVVRASSEWFPQKERSYAIGWVNSATTIGVI LTAPTVALFMRVLGFDWRETFIYTGIFGVVLLLLWLWLYSNPRESGKVSEAELAWIEHDPPEQVERIGWSRIVTKREAWA FAMAKFLTDPVWFLMLFWLPKYFSSTYDVDLKIVLLPMIIMYLLSDVGSILGGWVSSKLIQTGHSVNFARKVTMIGAGLC VLPLLFVTGLENMWLAVVLIGIALAGHQAFSSTILSIPPDMFPKRAVGSVIGLGGFMGGVGGMIMAKSTGLVLDATGGNY TLIFAACTTVYFLAVLAVHILSPRLAPVSVEGAK
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI154350196, Length=377, Percent_Identity=23.0769230769231, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI6912666, Length=443, Percent_Identity=23.0248306997743, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI21322234, Length=291, Percent_Identity=24.3986254295533, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI9966811, Length=292, Percent_Identity=23.2876712328767, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI9945322, Length=292, Percent_Identity=23.972602739726, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI2367193, Length=409, Percent_Identity=30.0733496332518, Blast_Score=172, Evalue=4e-44, Organism=Escherichia coli, GI2367379, Length=424, Percent_Identity=29.7169811320755, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI87082320, Length=407, Percent_Identity=27.5184275184275, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI1789515, Length=412, Percent_Identity=28.1553398058252, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1789152, Length=445, Percent_Identity=25.1685393258427, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI87082071, Length=381, Percent_Identity=21.259842519685, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI87082404, Length=354, Percent_Identity=24.5762711864407, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI87082231, Length=195, Percent_Identity=24.1025641025641, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17535049, Length=416, Percent_Identity=23.0769230769231, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71991453, Length=418, Percent_Identity=22.488038277512, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71991448, Length=418, Percent_Identity=22.488038277512, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17569727, Length=323, Percent_Identity=24.4582043343653, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560030, Length=357, Percent_Identity=22.4089635854342, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI86561091, Length=248, Percent_Identity=25.4032258064516, Blast_Score=68, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17552542, Length=355, Percent_Identity=23.943661971831, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25141318, Length=248, Percent_Identity=25.4032258064516, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25141316, Length=248, Percent_Identity=25.4032258064516, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI19920686, Length=413, Percent_Identity=23.0024213075061, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24583789, Length=369, Percent_Identity=26.0162601626016, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI24639764, Length=422, Percent_Identity=23.2227488151659, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641682, Length=386, Percent_Identity=20.9844559585492, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24584153, Length=377, Percent_Identity=23.342175066313, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47370; Mature: 47239
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQAIADRGAAVPVPRSGRYRWLIVAVLFAATTVNYIDRTMLGLLAPTLGQELGWSENDY CCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GNIVTAFQAAYALGFLFMGWLIDRFGPKIGYAIAIGIWTVGHVAHGFASSVVSFMLARVI CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGVGEAGHFPSVVRASSEWFPQKERSYAIGWVNSATTIGVILTAPTVALFMRVLGFDWRE HHCCCCCCCHHHHHCCHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCHHH TFIYTGIFGVVLLLLWLWLYSNPRESGKVSEAELAWIEHDPPEQVERIGWSRIVTKREAW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHCCHHHHHHHHHHH AFAMAKFLTDPVWFLMLFWLPKYFSSTYDVDLKIVLLPMIIMYLLSDVGSILGGWVSSKL HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQTGHSVNFARKVTMIGAGLCVLPLLFVTGLENMWLAVVLIGIALAGHQAFSSTILSIPP HHCCCCCHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DMFPKRAVGSVIGLGGFMGGVGGMIMAKSTGLVLDATGGNYTLIFAACTTVYFLAVLAVH CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCEEEHHHHHHHHHHHHHHHHH ILSPRLAPVSVEGAK HHCCCCCCCCCCCCC >Mature Secondary Structure AQAIADRGAAVPVPRSGRYRWLIVAVLFAATTVNYIDRTMLGLLAPTLGQELGWSENDY CCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GNIVTAFQAAYALGFLFMGWLIDRFGPKIGYAIAIGIWTVGHVAHGFASSVVSFMLARVI CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGVGEAGHFPSVVRASSEWFPQKERSYAIGWVNSATTIGVILTAPTVALFMRVLGFDWRE HHCCCCCCCHHHHHCCHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCHHH TFIYTGIFGVVLLLLWLWLYSNPRESGKVSEAELAWIEHDPPEQVERIGWSRIVTKREAW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHCCHHHHHHHHHHH AFAMAKFLTDPVWFLMLFWLPKYFSSTYDVDLKIVLLPMIIMYLLSDVGSILGGWVSSKL HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQTGHSVNFARKVTMIGAGLCVLPLLFVTGLENMWLAVVLIGIALAGHQAFSSTILSIPP HHCCCCCHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DMFPKRAVGSVIGLGGFMGGVGGMIMAKSTGLVLDATGGNYTLIFAACTTVYFLAVLAVH CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCEEEHHHHHHHHHHHHHHHHH ILSPRLAPVSVEGAK HHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: galacturonate [Periplasm]; Proton [Periplasm]; glucuronate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + galacturonate [Periplasm] = galacturonate [Cytoplasm] + Proton [Cytoplasm] Proton [Periplasm] + glucuronate [Periplasm] = Proton [Cytoplasm] + glucuronate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]