| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488438
Identifier: 103488438
GI number: 103488438
Start: 3103736
End: 3104788
Strand: Reverse
Name: 103488438
Synonym: Sala_2961
Alternate gene names: NA
Gene position: 3104788-3103736 (Counterclockwise)
Preceding gene: 103488439
Following gene: 103488434
Centisome position: 92.81
GC content: 69.61
Gene sequence:
>1053_bases ATGAGCGCCCGCAAAACCGCGATCGTCGTCGCGCCCGGCCGCGGCACTTATGGCAAGGGCGAGCTGGGCAGCATCGCGCG GCTGCATGGCGCGCGATTTGCCGATCTGATCGCCGATTTCGACGCGCAGCGCCGGATGCGCGGGCAGCCGACGGTGAGCG AACTCGACGGCGCCGATCGCTTCAGCGTGGCAACGCACATGCGCGGCGACGTCGCGGCGCCGCTGATCTACACCGCTACC GCGCTCGATTACCTGAGCATCGACCGCGACAGGTTCGACATCGTTGCGGCGCTCGGCAATTCGATGGGCTGGTACAGCGC GCTCGCGCTGGGCGGCGCGGTGTCGATCAGCGACGGGTTCCGCATCGCCAACGCCATGGGGCTCAACAGCCAGACGCACG GCCCCGGCGGGCAGGTCCTGCTGCAAATCGTCGATGACGACTGGCGCCCGATCCCCGACCGACGCGACCGGCTGTTCGAT CTTGTCGCCGCGATCGACGCGCGGCCGGGCCATGACCTCGCGCTGTCGATCGACCTCGCCGGGATGCTGGTGTTCGCGGG CAATGAGGAGGGCCTCGCCGCGCTGCTCGCCGAAGCGCCGCCGACGCCGGGGCGCGATCCGCTGCGCCTCGCGGGGCACG GCCCCTTTCATACCCCGCTGATGATCGGCAGTTCGGACAAGGCGAGGGCCGAACTGCCGCCGACGCTGTTCGGCGCCCCG GCGATCCCGCTGGTCGATGGTCGCGGCCATATCTGGCGCCGCTTCTCGTCCGATCCCGCGGCAGTCTGGGAATACAGCTT CGGTCACCAGATCCTGGCCCCCTATGATTTCGCGCTTTCGGTGCAGGTCGCGGTCAAGGAGGTCGCGCCCGATGTCATCA TCCTGCCCGGCCCCGGCGACACGCTGGGCGGCGCGATCGCCCAGGCGCTGATCGGCATCGGCTGGCAGGGGCTGACCAGC AAGGCCGATTTCATGGCGCGGCAGGCGTCGGACCCGATCCTCCTGTCGATGGGCCGCGCCGAGCAGCGCACGCTGGTCAT CAGGGACAAATAG
Upstream 100 bases:
>100_bases GCATCGCCGCCGACGACAGCTTCATCCCGCTGGGCAGGGCGGCAACGCTGACCCTGCCGAGCCGCGAGGGCATCATTGCC GCGGCAAGGGAGCTCCTGGC
Downstream 100 bases:
>100_bases GGTCGACAGGGCGTTTTCCCTGCCGACCCGTCGTGCGGGCGCGGTCAGGTGGGGTTGACCGCGCCCGGATGAACGGCAGC GCCCATGGGGACCAACACAA
Product: putative acyl-carrier protein
Products: NA
Alternate protein names: Acyl-Carrier Domain Protein; Malonyl CoA-Acyl Carrier Protein Transacylase; Acyl-Carrier Domain-Containing Protein; (Acyl-Carrier-Protein) S-Malonyltransferase-Like Protein; Acyl-Carrier Protein; Malonyl-CoA-[Acyl-Carrier-Protein] Transacylase
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MSARKTAIVVAPGRGTYGKGELGSIARLHGARFADLIADFDAQRRMRGQPTVSELDGADRFSVATHMRGDVAAPLIYTAT ALDYLSIDRDRFDIVAALGNSMGWYSALALGGAVSISDGFRIANAMGLNSQTHGPGGQVLLQIVDDDWRPIPDRRDRLFD LVAAIDARPGHDLALSIDLAGMLVFAGNEEGLAALLAEAPPTPGRDPLRLAGHGPFHTPLMIGSSDKARAELPPTLFGAP AIPLVDGRGHIWRRFSSDPAAVWEYSFGHQILAPYDFALSVQVAVKEVAPDVIILPGPGDTLGGAIAQALIGIGWQGLTS KADFMARQASDPILLSMGRAEQRTLVIRDK
Sequences:
>Translated_350_residues MSARKTAIVVAPGRGTYGKGELGSIARLHGARFADLIADFDAQRRMRGQPTVSELDGADRFSVATHMRGDVAAPLIYTAT ALDYLSIDRDRFDIVAALGNSMGWYSALALGGAVSISDGFRIANAMGLNSQTHGPGGQVLLQIVDDDWRPIPDRRDRLFD LVAAIDARPGHDLALSIDLAGMLVFAGNEEGLAALLAEAPPTPGRDPLRLAGHGPFHTPLMIGSSDKARAELPPTLFGAP AIPLVDGRGHIWRRFSSDPAAVWEYSFGHQILAPYDFALSVQVAVKEVAPDVIILPGPGDTLGGAIAQALIGIGWQGLTS KADFMARQASDPILLSMGRAEQRTLVIRDK >Mature_349_residues SARKTAIVVAPGRGTYGKGELGSIARLHGARFADLIADFDAQRRMRGQPTVSELDGADRFSVATHMRGDVAAPLIYTATA LDYLSIDRDRFDIVAALGNSMGWYSALALGGAVSISDGFRIANAMGLNSQTHGPGGQVLLQIVDDDWRPIPDRRDRLFDL VAAIDARPGHDLALSIDLAGMLVFAGNEEGLAALLAEAPPTPGRDPLRLAGHGPFHTPLMIGSSDKARAELPPTLFGAPA IPLVDGRGHIWRRFSSDPAAVWEYSFGHQILAPYDFALSVQVAVKEVAPDVIILPGPGDTLGGAIAQALIGIGWQGLTSK ADFMARQASDPILLSMGRAEQRTLVIRDK
Specific function: Unknown
COG id: COG0331
COG function: function code I; (acyl-carrier-protein) S-malonyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37200; Mature: 37069
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARKTAIVVAPGRGTYGKGELGSIARLHGARFADLIADFDAQRRMRGQPTVSELDGADR CCCCCEEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHCCCHHHHHCCCCCHHHCCCCCC FSVATHMRGDVAAPLIYTATALDYLSIDRDRFDIVAALGNSMGWYSALALGGAVSISDGF EEHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHCCEEEECCCC RIANAMGLNSQTHGPGGQVLLQIVDDDWRPIPDRRDRLFDLVAAIDARPGHDLALSIDLA EEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE GMLVFAGNEEGLAALLAEAPPTPGRDPLRLAGHGPFHTPLMIGSSDKARAELPPTLFGAP EEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCHHCCCC AIPLVDGRGHIWRRFSSDPAAVWEYSFGHQILAPYDFALSVQVAVKEVAPDVIILPGPGD CCEEECCCCCEEEECCCCCCEEEEECCCCEEECCCCEEEEEEEEHHHHCCCEEEECCCCC TLGGAIAQALIGIGWQGLTSKADFMARQASDPILLSMGRAEQRTLVIRDK HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEECC >Mature Secondary Structure SARKTAIVVAPGRGTYGKGELGSIARLHGARFADLIADFDAQRRMRGQPTVSELDGADR CCCCEEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHCCCHHHHHCCCCCHHHCCCCCC FSVATHMRGDVAAPLIYTATALDYLSIDRDRFDIVAALGNSMGWYSALALGGAVSISDGF EEHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHCCEEEECCCC RIANAMGLNSQTHGPGGQVLLQIVDDDWRPIPDRRDRLFDLVAAIDARPGHDLALSIDLA EEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE GMLVFAGNEEGLAALLAEAPPTPGRDPLRLAGHGPFHTPLMIGSSDKARAELPPTLFGAP EEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCHHCCCC AIPLVDGRGHIWRRFSSDPAAVWEYSFGHQILAPYDFALSVQVAVKEVAPDVIILPGPGD CCEEECCCCCEEEECCCCCCEEEEECCCCEEECCCCEEEEEEEEHHHHCCCEEEECCCCC TLGGAIAQALIGIGWQGLTSKADFMARQASDPILLSMGRAEQRTLVIRDK HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA