Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 103488434

GI number: 103488434

Start: 3099872

End: 3100360

Strand: Reverse

Name: rpoE [H]

Synonym: Sala_2957

Alternate gene names: 103488434

Gene position: 3100360-3099872 (Counterclockwise)

Preceding gene: 103488438

Following gene: 103488433

Centisome position: 92.68

GC content: 66.67

Gene sequence:

>489_bases
ATGCGCTTTGAAGAGAAACTGATCGAACTGCTGCCGCGGCTGCGCCGGTTTGCGCGCGGCCTGACGCAGAGCGCCGCCGA
TGCCGACGATCTGTGTCAGGCGGCGATCGAACGCGCGCTGAAGTCGCGCGATCAATGGCAGGATGGAACAAGACTGGACA
GCTGGATGTATCGTATCACCCGAAATCTGTGGATCGACGAGCGCCGTGGCGCGGGTCGGCGCGGCGTCCATGACGTGATC
GACGAGGCGGTAACGCAGATCGCCGGCGACGGCGCCGCCGAGGTCGAGGCGGGGGCGCTGCGCAGCGACGTGGACGGCGC
GATGGCGCGCCTGCCCGACGAGCAGCGCGAGGTCGTCATGCTCGTCCTCGTCGAAGGCTATGCCTATCGCGAAGCAGCCG
AAATCCTCGACGTGCCAATCGGCACCGTCACGTCGCGGCTCGCGCGCGGCCGCGACACGTTGATGCAGCTTTTGGGAGAA
GCGGCATGA

Upstream 100 bases:

>100_bases
TCCGGGCCGCCGCGGCCCGCCTTCGCGGAAAAAATTAGCACGATAGGGAAGAAACGATAGAAGGACATCGTTTCGTCCAC
AGGCAATCGAAAAGGCGACG

Downstream 100 bases:

>100_bases
GTTTCGACCCCGCCACCGTCGCGGCCTATGTCGACGGCGAACTCGACGACCTGACCGCGCGCCGCGTTGCGCGCGAGGCC
GCGAGCGACCCGGCGCTTGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRFEEKLIELLPRLRRFARGLTQSAADADDLCQAAIERALKSRDQWQDGTRLDSWMYRITRNLWIDERRGAGRRGVHDVI
DEAVTQIAGDGAAEVEAGALRSDVDGAMARLPDEQREVVMLVLVEGYAYREAAEILDVPIGTVTSRLARGRDTLMQLLGE
AA

Sequences:

>Translated_162_residues
MRFEEKLIELLPRLRRFARGLTQSAADADDLCQAAIERALKSRDQWQDGTRLDSWMYRITRNLWIDERRGAGRRGVHDVI
DEAVTQIAGDGAAEVEAGALRSDVDGAMARLPDEQREVVMLVLVEGYAYREAAEILDVPIGTVTSRLARGRDTLMQLLGE
AA
>Mature_162_residues
MRFEEKLIELLPRLRRFARGLTQSAADADDLCQAAIERALKSRDQWQDGTRLDSWMYRITRNLWIDERRGAGRRGVHDVI
DEAVTQIAGDGAAEVEAGALRSDVDGAMARLPDEQREVVMLVLVEGYAYREAAEILDVPIGTVTSRLARGRDTLMQLLGE
AA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18111; Mature: 18111

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFEEKLIELLPRLRRFARGLTQSAADADDLCQAAIERALKSRDQWQDGTRLDSWMYRIT
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RNLWIDERRGAGRRGVHDVIDEAVTQIAGDGAAEVEAGALRSDVDGAMARLPDEQREVVM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LVLVEGYAYREAAEILDVPIGTVTSRLARGRDTLMQLLGEAA
HHHHHCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MRFEEKLIELLPRLRRFARGLTQSAADADDLCQAAIERALKSRDQWQDGTRLDSWMYRIT
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RNLWIDERRGAGRRGVHDVIDEAVTQIAGDGAAEVEAGALRSDVDGAMARLPDEQREVVM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LVLVEGYAYREAAEILDVPIGTVTSRLARGRDTLMQLLGEAA
HHHHHCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]