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The map label for this gene is ycaD [C]

Identifier: 103488431

GI number: 103488431

Start: 3096584

End: 3097822

Strand: Direct

Name: ycaD [C]

Synonym: Sala_2954

Alternate gene names: 103488431

Gene position: 3096584-3097822 (Clockwise)

Preceding gene: 103488430

Following gene: 103488432

Centisome position: 92.57

GC content: 70.06

Gene sequence:

>1239_bases
ATGCTCGCAATCATCACCCCTGTCCGCAGCCTGCTCGTCGCCATCTTCGTGATGATGGCGGGCAGCGGCTTCCTCTCGAC
GCTGATCGGCCTCCGGCTCGAACGCGCGGGCAGCGGGACGATGGTGATCGGCCTGATCGCCACCGCCTATTTTGGCGGGC
TGGTGCTCGGCGCCTTGCGCGCGGGCGATGTCGTGCGCCGCGTCGGGCATATCCGCGCCTTCGCCGCCTTCGTCGCGCTG
CTGTCGGCGAGCACGCTCACCTATGCGCTGCTCCAGCAGCCCTTGCTGTGGGCGGTGCTACGCCTGATCGACGGCCTGTG
CATCGCGGGGGTGTTCATCTGCGTCGAAAGCTGGCTCAACGACCGCGCCGAGGCGGAGACGCGCGGCACGGTGCTCGCTT
TCTATATGGTCGCGCTCTATTCGGGGCAGGCGATCGGGCAATTGCTGCTGCGTTCGGGCAACAGCGCGCCGCAAATCCCC
TTCGAGCTTGCGTCGATCCTCATCTCGCTCGCGATCATTCCCGTCTGCCTGACGCGGAGCGCCGCGCCCGCGCTCGAAGA
TGCGGCATCGCTGCCGCTGCGGCGCCTGTTCGCGGCGTCGCCGCTCGGCGTCGTCGGCGCGGGGATGACCGGGCTGCTGC
TCGGCGCCTTCTATGGTCTCGCCGCCATTTATGCGCGGCGGATCGGTCTCAGCCTTGCCGACACCGCCTCTTTCATGATG
ACGGTCATCCTCGGCGGCGTCGCGCTGCAATGGCCGCTCGGCCGCCTGTCCGACCGTTTCGACCGGCGGCGCGTCATCAT
CGCCTGCTTCGCCGCGACGCTGGGCGTCAGCATCGCGCTCGCCATGGCCCCGACGGGCGCCGCGCTGTTCGCGCTCGGCG
CGCTGTTCGGTGGGCTCAGCTTCGCGCTCTATCCGCTCTGCGTCGCCTTTGCCAACGACCGGCTGCTGCCATCGGAGCGC
GTCACCGCGAGCGGTCAGCTCGTGCTTCTCTATTCGGTCGGCGCCGCGCTCGGCCCGATCGGCGCGGCGGCGGCGATGAC
CGCCGCGGGGGCGGGCGGGCTCTTCCTCTTCATCGCCTTCGCGGCAGCGGCAATGCTCGCTTTCGGCCTCTGGCGCCTCG
CCGCCAGCGATCCCGTGCCTGCCGCGGCGCAGCAGGATTTCCAGATCCTGCCGCGCACGACGCCCGTTGCCGCGCTGCTC
GACCCCGCCGGCCCCGAACCCAACCCGGAAAACAGGTGA

Upstream 100 bases:

>100_bases
GGCCGCGGTGCGCGCGCTGCACAAGGCGCTGGTCGAGCGTGACGCGAGAACGGAGGAAAAGCGGCGCGCCGCCTGACGGG
CGTACGTGCCGAAGCCGCCG

Downstream 100 bases:

>100_bases
TCCATGGACAAGACGCTGCCCCCCCACGCCCCCGGCCATCCGCCGCCGTTTCGCGAACCATCGCCGCTCCACCGCGCGGT
CGGCGCCTCGGCGCTCGGCA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLAIITPVRSLLVAIFVMMAGSGFLSTLIGLRLERAGSGTMVIGLIATAYFGGLVLGALRAGDVVRRVGHIRAFAAFVAL
LSASTLTYALLQQPLLWAVLRLIDGLCIAGVFICVESWLNDRAEAETRGTVLAFYMVALYSGQAIGQLLLRSGNSAPQIP
FELASILISLAIIPVCLTRSAAPALEDAASLPLRRLFAASPLGVVGAGMTGLLLGAFYGLAAIYARRIGLSLADTASFMM
TVILGGVALQWPLGRLSDRFDRRRVIIACFAATLGVSIALAMAPTGAALFALGALFGGLSFALYPLCVAFANDRLLPSER
VTASGQLVLLYSVGAALGPIGAAAAMTAAGAGGLFLFIAFAAAAMLAFGLWRLAASDPVPAAAQQDFQILPRTTPVAALL
DPAGPEPNPENR

Sequences:

>Translated_412_residues
MLAIITPVRSLLVAIFVMMAGSGFLSTLIGLRLERAGSGTMVIGLIATAYFGGLVLGALRAGDVVRRVGHIRAFAAFVAL
LSASTLTYALLQQPLLWAVLRLIDGLCIAGVFICVESWLNDRAEAETRGTVLAFYMVALYSGQAIGQLLLRSGNSAPQIP
FELASILISLAIIPVCLTRSAAPALEDAASLPLRRLFAASPLGVVGAGMTGLLLGAFYGLAAIYARRIGLSLADTASFMM
TVILGGVALQWPLGRLSDRFDRRRVIIACFAATLGVSIALAMAPTGAALFALGALFGGLSFALYPLCVAFANDRLLPSER
VTASGQLVLLYSVGAALGPIGAAAAMTAAGAGGLFLFIAFAAAAMLAFGLWRLAASDPVPAAAQQDFQILPRTTPVAALL
DPAGPEPNPENR
>Mature_412_residues
MLAIITPVRSLLVAIFVMMAGSGFLSTLIGLRLERAGSGTMVIGLIATAYFGGLVLGALRAGDVVRRVGHIRAFAAFVAL
LSASTLTYALLQQPLLWAVLRLIDGLCIAGVFICVESWLNDRAEAETRGTVLAFYMVALYSGQAIGQLLLRSGNSAPQIP
FELASILISLAIIPVCLTRSAAPALEDAASLPLRRLFAASPLGVVGAGMTGLLLGAFYGLAAIYARRIGLSLADTASFMM
TVILGGVALQWPLGRLSDRFDRRRVIIACFAATLGVSIALAMAPTGAALFALGALFGGLSFALYPLCVAFANDRLLPSER
VTASGQLVLLYSVGAALGPIGAAAAMTAAGAGGLFLFIAFAAAAMLAFGLWRLAASDPVPAAAQQDFQILPRTTPVAALL
DPAGPEPNPENR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=367, Percent_Identity=31.6076294277929, Blast_Score=145, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42634; Mature: 42634

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAIITPVRSLLVAIFVMMAGSGFLSTLIGLRLERAGSGTMVIGLIATAYFGGLVLGALR
CCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
AGDVVRRVGHIRAFAAFVALLSASTLTYALLQQPLLWAVLRLIDGLCIAGVFICVESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRAEAETRGTVLAFYMVALYSGQAIGQLLLRSGNSAPQIPFELASILISLAIIPVCLTRS
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
AAPALEDAASLPLRRLFAASPLGVVGAGMTGLLLGAFYGLAAIYARRIGLSLADTASFMM
CCHHHHHHHHCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TVILGGVALQWPLGRLSDRFDRRRVIIACFAATLGVSIALAMAPTGAALFALGALFGGLS
HHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FALYPLCVAFANDRLLPSERVTASGQLVLLYSVGAALGPIGAAAAMTAAGAGGLFLFIAF
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHHH
AAAAMLAFGLWRLAASDPVPAAAQQDFQILPRTTPVAALLDPAGPEPNPENR
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLAIITPVRSLLVAIFVMMAGSGFLSTLIGLRLERAGSGTMVIGLIATAYFGGLVLGALR
CCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
AGDVVRRVGHIRAFAAFVALLSASTLTYALLQQPLLWAVLRLIDGLCIAGVFICVESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRAEAETRGTVLAFYMVALYSGQAIGQLLLRSGNSAPQIPFELASILISLAIIPVCLTRS
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
AAPALEDAASLPLRRLFAASPLGVVGAGMTGLLLGAFYGLAAIYARRIGLSLADTASFMM
CCHHHHHHHHCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TVILGGVALQWPLGRLSDRFDRRRVIIACFAATLGVSIALAMAPTGAALFALGALFGGLS
HHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FALYPLCVAFANDRLLPSERVTASGQLVLLYSVGAALGPIGAAAAMTAAGAGGLFLFIAF
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHHH
AAAAMLAFGLWRLAASDPVPAAAQQDFQILPRTTPVAALLDPAGPEPNPENR
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA