| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is lysC [C]
Identifier: 103488430
GI number: 103488430
Start: 3095117
End: 3096559
Strand: Direct
Name: lysC [C]
Synonym: Sala_2953
Alternate gene names: 103488430
Gene position: 3095117-3096559 (Clockwise)
Preceding gene: 103488429
Following gene: 103488431
Centisome position: 92.52
GC content: 67.64
Gene sequence:
>1443_bases ATGAGCGGGCAGCATAGCGTCGAAAAGATCGGCGGCACCTCGATGGCCGCGACCGCGACCCTGTTCGACAATGTGCTCAT CGCGGGGCGGTCGGGCGCCGATCTCTACAACCGTATCTTCGTCGTCTCGGCCTATGCCGGGATGACCGACCTGCTCCTCG AAAACAAGAAAACGGGGGCGCCCGGCGTCTACGGCCATTTCGTCGACGACGACGATGCCGACGCCTGGCGGCGCGCGATG GCGGCGGTGCGCGCGGCGATGCACGCGCGCAATGCGGATATGTTCGCGCGGGGCGACAGCCGGGCCGAGGCCGACCGCTT CGTCGACGCACGCATCGACGCCGTCACCGCCTGCCTCGACGACCTCGCGCGGCTGCGCAGTCACGGCCGCTTCGGGCTGA AGGACCAGCTTGCCACGGTGCGCGAACTGCTCGCCGGGATCGGCGAGGCGCACAGCGCACACAGCACCGCGCTGCTGCTT CGCGACCGCGATGTGAACGCATTGTTCGTCGATCTGACGCTATGGGACCAGGACGATCTGCGCAGCCTCGACGAGCGGAT CGGGGAGGCCTTTGCCGCGATCGACCTTCGGGACACGCTGCCGATCGTGACCGGCTATGCCGGGTGCGAGGGCGGCATGG TGCGGCGCTATGCGCGCGGCTATACCGAAATGACCTTCTCGCGGCTCGCCGTGCTCACCGGCGCGCGCGAGGCGATCATC CACAAGGAGTTCCACCTGTCGAGCGCCGACCCCAAGCTGGTCGGCGAGGACAAGGCACGCAAGATCGGCCGCACCAATTA CGACGTCGCCGACCAGCTCGCCAATCTCGGCATGGAGGCGATCCACCCCGGCGCCGGGCGCGGGCTGCGCCAGTCGGGCA TTCCGCTGCGCGTGCGCAACACCTTCGACCGCGAGGACGAAGGCACGCTCGTCACCGGCGACTATGTCTCCGACGTCCCG CGCGTCGAGATCGTCACCGGGCTGCGTCAGGTGCAGGCGCTGCAATTCTTCGAACAGGATATGGTGGGCGTGAAGGGTTA TGACGCCGCGATCCTCGACGCGCTGGCGCGCCACAAGCTGTGGATCGTCAGCAAATCGTCGAATGCCAACACGATCACCC ATTATCTGTCGGCGAGCGCCGCAGCGGTGAACAAGGCGATCGCCGACTTGCAAGGACATTATCCCGACGCCGCCATCTCG GCGCAGCCGGTGGCGATGGTGTCGGTGATCGGCAGCGACATCTCGCGCCCCGGCCTCGTCCCCGATGCGCTGCGCGCGCT CGACGCGGCGGGCGTCACGATGATCGCGATGCAGCACCAGATCCGCAACGTCGATGTCCAGTTCCTCGTCGATCCGCGCG ACTTTGAGGCCGCGGTGCGCGCGCTGCACAAGGCGCTGGTCGAGCGTGACGCGAGAACGGAGGAAAAGCGGCGCGCCGCC TGA
Upstream 100 bases:
>100_bases CCTTCGGCGTCGAAAAGCCGCGCCCCTGGTTCCTCGCCCGTCGCGGCGAGCCCGCGGCGCTCCGGGTTGAGCGCGGGCCG CTCGTCGAAACGGTGCCGGC
Downstream 100 bases:
>100_bases CGGGCGTACGTGCCGAAGCCGCCGATGCTCGCAATCATCACCCCTGTCCGCAGCCTGCTCGTCGCCATCTTCGTGATGAT GGCGGGCAGCGGCTTCCTCT
Product: aspartate kinase
Products: NA
Alternate protein names: Aspartate kinase [H]
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MSGQHSVEKIGGTSMAATATLFDNVLIAGRSGADLYNRIFVVSAYAGMTDLLLENKKTGAPGVYGHFVDDDDADAWRRAM AAVRAAMHARNADMFARGDSRAEADRFVDARIDAVTACLDDLARLRSHGRFGLKDQLATVRELLAGIGEAHSAHSTALLL RDRDVNALFVDLTLWDQDDLRSLDERIGEAFAAIDLRDTLPIVTGYAGCEGGMVRRYARGYTEMTFSRLAVLTGAREAII HKEFHLSSADPKLVGEDKARKIGRTNYDVADQLANLGMEAIHPGAGRGLRQSGIPLRVRNTFDREDEGTLVTGDYVSDVP RVEIVTGLRQVQALQFFEQDMVGVKGYDAAILDALARHKLWIVSKSSNANTITHYLSASAAAVNKAIADLQGHYPDAAIS AQPVAMVSVIGSDISRPGLVPDALRALDAAGVTMIAMQHQIRNVDVQFLVDPRDFEAAVRALHKALVERDARTEEKRRAA
Sequences:
>Translated_480_residues MSGQHSVEKIGGTSMAATATLFDNVLIAGRSGADLYNRIFVVSAYAGMTDLLLENKKTGAPGVYGHFVDDDDADAWRRAM AAVRAAMHARNADMFARGDSRAEADRFVDARIDAVTACLDDLARLRSHGRFGLKDQLATVRELLAGIGEAHSAHSTALLL RDRDVNALFVDLTLWDQDDLRSLDERIGEAFAAIDLRDTLPIVTGYAGCEGGMVRRYARGYTEMTFSRLAVLTGAREAII HKEFHLSSADPKLVGEDKARKIGRTNYDVADQLANLGMEAIHPGAGRGLRQSGIPLRVRNTFDREDEGTLVTGDYVSDVP RVEIVTGLRQVQALQFFEQDMVGVKGYDAAILDALARHKLWIVSKSSNANTITHYLSASAAAVNKAIADLQGHYPDAAIS AQPVAMVSVIGSDISRPGLVPDALRALDAAGVTMIAMQHQIRNVDVQFLVDPRDFEAAVRALHKALVERDARTEEKRRAA >Mature_479_residues SGQHSVEKIGGTSMAATATLFDNVLIAGRSGADLYNRIFVVSAYAGMTDLLLENKKTGAPGVYGHFVDDDDADAWRRAMA AVRAAMHARNADMFARGDSRAEADRFVDARIDAVTACLDDLARLRSHGRFGLKDQLATVRELLAGIGEAHSAHSTALLLR DRDVNALFVDLTLWDQDDLRSLDERIGEAFAAIDLRDTLPIVTGYAGCEGGMVRRYARGYTEMTFSRLAVLTGAREAIIH KEFHLSSADPKLVGEDKARKIGRTNYDVADQLANLGMEAIHPGAGRGLRQSGIPLRVRNTFDREDEGTLVTGDYVSDVPR VEIVTGLRQVQALQFFEQDMVGVKGYDAAILDALARHKLWIVSKSSNANTITHYLSASAAAVNKAIADLQGHYPDAAISA QPVAMVSVIGSDISRPGLVPDALRALDAAGVTMIAMQHQIRNVDVQFLVDPRDFEAAVRALHKALVERDARTEEKRRAA
Specific function: Lysine biosynthesis; first step. [C]
COG id: COG0527
COG function: function code E; Aspartokinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ACT domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR001048 - InterPro: IPR005260 - InterPro: IPR001341 - InterPro: IPR018042 [H]
Pfam domain/function: PF00696 AA_kinase; PF01842 ACT [H]
EC number: =2.7.2.4 [H]
Molecular weight: Translated: 52150; Mature: 52018
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQHSVEKIGGTSMAATATLFDNVLIAGRSGADLYNRIFVVSAYAGMTDLLLENKKTGA CCCCCCHHHHCCCHHHHHHHHHHCEEEECCCCCHHHHHEEEEEHHCCHHHHHHCCCCCCC PGVYGHFVDDDDADAWRRAMAAVRAAMHARNADMFARGDSRAEADRFVDARIDAVTACLD CCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH DLARLRSHGRFGLKDQLATVRELLAGIGEAHSAHSTALLLRDRDVNALFVDLTLWDQDDL HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHH RSLDERIGEAFAAIDLRDTLPIVTGYAGCEGGMVRRYARGYTEMTFSRLAVLTGAREAII HHHHHHHHHHHHHCCHHHCCCHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHH HKEFHLSSADPKLVGEDKARKIGRTNYDVADQLANLGMEAIHPGAGRGLRQSGIPLRVRN HHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCCCHHCCCCEEEEC TFDREDEGTLVTGDYVSDVPRVEIVTGLRQVQALQFFEQDMVGVKGYDAAILDALARHKL CCCCCCCCCEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCEE WIVSKSSNANTITHYLSASAAAVNKAIADLQGHYPDAAISAQPVAMVSVIGSDISRPGLV EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC PDALRALDAAGVTMIAMQHQIRNVDVQFLVDPRDFEAAVRALHKALVERDARTEEKRRAA HHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHCCC >Mature Secondary Structure SGQHSVEKIGGTSMAATATLFDNVLIAGRSGADLYNRIFVVSAYAGMTDLLLENKKTGA CCCCCHHHHCCCHHHHHHHHHHCEEEECCCCCHHHHHEEEEEHHCCHHHHHHCCCCCCC PGVYGHFVDDDDADAWRRAMAAVRAAMHARNADMFARGDSRAEADRFVDARIDAVTACLD CCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH DLARLRSHGRFGLKDQLATVRELLAGIGEAHSAHSTALLLRDRDVNALFVDLTLWDQDDL HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHH RSLDERIGEAFAAIDLRDTLPIVTGYAGCEGGMVRRYARGYTEMTFSRLAVLTGAREAII HHHHHHHHHHHHHCCHHHCCCHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHH HKEFHLSSADPKLVGEDKARKIGRTNYDVADQLANLGMEAIHPGAGRGLRQSGIPLRVRN HHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCCCHHCCCCEEEEC TFDREDEGTLVTGDYVSDVPRVEIVTGLRQVQALQFFEQDMVGVKGYDAAILDALARHKL CCCCCCCCCEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCEE WIVSKSSNANTITHYLSASAAAVNKAIADLQGHYPDAAISAQPVAMVSVIGSDISRPGLV EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC PDALRALDAAGVTMIAMQHQIRNVDVQFLVDPRDFEAAVRALHKALVERDARTEEKRRAA HHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]