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The map label for this gene is fliN [H]

Identifier: 103488405

GI number: 103488405

Start: 3073819

End: 3074154

Strand: Reverse

Name: fliN [H]

Synonym: Sala_2928

Alternate gene names: 103488405

Gene position: 3074154-3073819 (Counterclockwise)

Preceding gene: 103488406

Following gene: 103488404

Centisome position: 91.9

GC content: 67.26

Gene sequence:

>336_bases
ATGACTGACGTAGCCGACGCGCCAAAGGCGGCGCGCGCCGACCGGCGCGACAAGAGCATCGCCGCCGCGCCCAATTTCGA
CCTGCTCGCCGGCGTTTCACTGCGCGTGTCGGTCGAGGTCGGGTCGACCTCGATGACGCTCGCCGAACTGCTTGCGCTGG
GCGAAGGCAGCGTGATCGAGCTTGATCGCGCCGCGACCGACCTGCTCGACATCTATGCCAATGGCACATTGATCGCGAAG
GGCGAGATCGTCAGCGTCGATGGCCGCTACGGCATCCAGGTCGCCGAAGTCGTCGCGCCCGCGCGCGGCCTCGAAGGTTT
CGAGCGGAGAGCCTGA

Upstream 100 bases:

>100_bases
CCGGTGACGGTCGCCGGGCGCAGCTTCGCTTTCGGAAGCATCGGCGAAGCCAATGGCAACGCCGCCATCCTGATTGACCA
TATCGAAAAAGGACCCGACC

Downstream 100 bases:

>100_bases
TGCTCGAATATATCCTTCGCTTGGCTCTCCTGCTGCCGCTGGTCGGGGCGATGGCGTGGGGCAGCCTGTGGCTGTGGAAG
CGCGTCCAGATGGGCGTGCC

Product: flagellar motor switch FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MTDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAK
GEIVSVDGRYGIQVAEVVAPARGLEGFERRA

Sequences:

>Translated_111_residues
MTDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAK
GEIVSVDGRYGIQVAEVVAPARGLEGFERRA
>Mature_110_residues
TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKG
EIVSVDGRYGIQVAEVVAPARGLEGFERRA

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=85, Percent_Identity=40, Blast_Score=72, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11571; Mature: 11440

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIE
CCCCCCCCCCCCCCCCCCCEECCCCCCEEECCEEEEEEEECCCHHHHHHHHHCCCCCEEE
LDRAATDLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAPARGLEGFERRA
ECHHHHHHHHHHCCCEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIE
CCCCCCCCCCCCCCCCCCEECCCCCCEEECCEEEEEEEECCCHHHHHHHHHCCCCCEEE
LDRAATDLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAPARGLEGFERRA
ECHHHHHHHHHHCCCEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]