| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488383
Identifier: 103488383
GI number: 103488383
Start: 3056506
End: 3056805
Strand: Reverse
Name: 103488383
Synonym: Sala_2906
Alternate gene names: NA
Gene position: 3056805-3056506 (Counterclockwise)
Preceding gene: 103488384
Following gene: 103488382
Centisome position: 91.38
GC content: 73.0
Gene sequence:
>300_bases ATGTCGGGTGACAGCAAGATCGGATCCGTTGGCGGCGTCGCCCGCACCGGCCCGCTGCGCCGCGTCGTCGGCGAGGCGAC GGCTTCGGCCCGCGCACCCGCGCAGGTCCGGCCCGCGTCGGACAATCTGCCCACCGCGCGGTTGACGCGCCTGGCGAACA ATCTCGCCGACCAGCCGCCGCCGGTCGATGTTGCGCGCGTCGCCGCGCTGCGCACCGCGATCGGCACGGGCAATTACGGC GTTCACCCGGCGATCATCGCCAGCGCGATGCTCGACTTCCACGGCCGCGGAACCGACTGA
Upstream 100 bases:
>100_bases CTTTTTGCACGCGGCCGCGCTTAATCCCCCGGATCGCGCGCCGTTAAAGCCTTCGTGAAGCGCGTCGTCACTTTTCTGAC GGCGCCCGATGGAGGCATGC
Downstream 100 bases:
>100_bases TGCTGGCGGCGATGGACGAGGTGCAGGCGCGGCTCGATGCGCTGATCGACGCGCTCGACGGGCATGATGCGGGCGCGATC ATCGCCGCGACCGAAGCGCT
Product: putative anti-sigma-28 factor, FlgM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 99; Mature: 98
Protein sequence:
>99_residues MSGDSKIGSVGGVARTGPLRRVVGEATASARAPAQVRPASDNLPTARLTRLANNLADQPPPVDVARVAALRTAIGTGNYG VHPAIIASAMLDFHGRGTD
Sequences:
>Translated_99_residues MSGDSKIGSVGGVARTGPLRRVVGEATASARAPAQVRPASDNLPTARLTRLANNLADQPPPVDVARVAALRTAIGTGNYG VHPAIIASAMLDFHGRGTD >Mature_98_residues SGDSKIGSVGGVARTGPLRRVVGEATASARAPAQVRPASDNLPTARLTRLANNLADQPPPVDVARVAALRTAIGTGNYGV HPAIIASAMLDFHGRGTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10068; Mature: 9936
Theoretical pI: Translated: 11.62; Mature: 11.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGDSKIGSVGGVARTGPLRRVVGEATASARAPAQVRPASDNLPTARLTRLANNLADQPP CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC PVDVARVAALRTAIGTGNYGVHPAIIASAMLDFHGRGTD CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SGDSKIGSVGGVARTGPLRRVVGEATASARAPAQVRPASDNLPTARLTRLANNLADQPP CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC PVDVARVAALRTAIGTGNYGVHPAIIASAMLDFHGRGTD CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA