| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488361
Identifier: 103488361
GI number: 103488361
Start: 3036057
End: 3036569
Strand: Direct
Name: 103488361
Synonym: Sala_2884
Alternate gene names: NA
Gene position: 3036057-3036569 (Clockwise)
Preceding gene: 103488360
Following gene: 103488364
Centisome position: 90.76
GC content: 58.87
Gene sequence:
>513_bases ATGCCTTACGCTCAATCAGCGCGAATGACTTTTGCCAACATGCTCGGCACGCTCGACCATCTTGTCGGCAAGGCTATAGA TGCCAAGATGCCGGACGACGTGCTGAGGGCACAGCTGACCGAGGATATGTTCCCGCTCGAGCTTCAGTTCCGCGTCGCTT TGAACCAGGTGCTTCTGGCCCTCAATCAAGTCGGTGGAACGACGGTCCCGCTCGAAGAAACCACGTACACGTCGCTTGCA GAGGTTCGTCAGCGGATTGCCGCGGTCCGCGCGCTCGTTGATCAGACCGATCCTGCTCGATGGGCGGACGCCGAAGCAAA GGTCGATCTGACATTGCCGAATGGCGTGCGCTTTGTGATGTCCTCCGAAGAGGATGTTCGCGACTGGATCATGCCGAACT TCTATTTTCACGTGACGATGGCGTACGCCTTGCTGCGCGATGCGGGGCTGGCCATCGGCAAGATGGATTTCATCCCGCAT ATGGCCCGCCACAAGGTGTCGGCCGCGGACTAG
Upstream 100 bases:
>100_bases CAGCGACATTTCCGAAATTGCGCGGATCGCGAATGATATGCTGGCCAATGGCTTAAAAAAAAGAGATTGAAGGCCCGGTG GCCACTTACAGGGATATGCG
Downstream 100 bases:
>100_bases CGGCGGATCCGCTACGCTCCCGTCGCTGTTGCCTGCGACTTGGGGACTTAGCCTCGCGCGATCAGGAAAATCGCATGTTC GGCGCGCCAGCTTGCGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MPYAQSARMTFANMLGTLDHLVGKAIDAKMPDDVLRAQLTEDMFPLELQFRVALNQVLLALNQVGGTTVPLEETTYTSLA EVRQRIAAVRALVDQTDPARWADAEAKVDLTLPNGVRFVMSSEEDVRDWIMPNFYFHVTMAYALLRDAGLAIGKMDFIPH MARHKVSAAD
Sequences:
>Translated_170_residues MPYAQSARMTFANMLGTLDHLVGKAIDAKMPDDVLRAQLTEDMFPLELQFRVALNQVLLALNQVGGTTVPLEETTYTSLA EVRQRIAAVRALVDQTDPARWADAEAKVDLTLPNGVRFVMSSEEDVRDWIMPNFYFHVTMAYALLRDAGLAIGKMDFIPH MARHKVSAAD >Mature_169_residues PYAQSARMTFANMLGTLDHLVGKAIDAKMPDDVLRAQLTEDMFPLELQFRVALNQVLLALNQVGGTTVPLEETTYTSLAE VRQRIAAVRALVDQTDPARWADAEAKVDLTLPNGVRFVMSSEEDVRDWIMPNFYFHVTMAYALLRDAGLAIGKMDFIPHM ARHKVSAAD
Specific function: Unknown
COG id: COG3812
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18966; Mature: 18835
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYAQSARMTFANMLGTLDHLVGKAIDAKMPDDVLRAQLTEDMFPLELQFRVALNQVLLA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LNQVGGTTVPLEETTYTSLAEVRQRIAAVRALVDQTDPARWADAEAKVDLTLPNGVRFVM HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE SSEEDVRDWIMPNFYFHVTMAYALLRDAGLAIGKMDFIPHMARHKVSAAD CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PYAQSARMTFANMLGTLDHLVGKAIDAKMPDDVLRAQLTEDMFPLELQFRVALNQVLLA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LNQVGGTTVPLEETTYTSLAEVRQRIAAVRALVDQTDPARWADAEAKVDLTLPNGVRFVM HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE SSEEDVRDWIMPNFYFHVTMAYALLRDAGLAIGKMDFIPHMARHKVSAAD CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA