| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488350
Identifier: 103488350
GI number: 103488350
Start: 3023774
End: 3025300
Strand: Reverse
Name: 103488350
Synonym: Sala_2873
Alternate gene names: NA
Gene position: 3025300-3023774 (Counterclockwise)
Preceding gene: 103488351
Following gene: 103488348
Centisome position: 90.44
GC content: 69.09
Gene sequence:
>1527_bases TTGAGCCAGACGGACAGCGCAGCCGCGCCCCTTTCGCCCCGTGCATCGCCGCAGGACGCCGACACCGTTGCGCTTGCCAA GGGCGGGCGCACCAACTTTTTCGGCTTCATCCTGCGCCTCGTCGCGCGCCTGCCCTTTCTCTATGTCGCGGGCCGCTGGT ACGGGCCCGAAGCGGTCGGGCGTTTCGCCTTTGCGGTGCTGGTCATCGAACTTGTCGCGCAGCTCGCGACGCTCGGCCTC AAGCGCGGCCTCGCCGAACAGCTGAGCGCGCCCGGCGCCGACCAGCGCACCGTCGTCTGGGACGGCATGTTCGTGGCGTT CCTGGCCTCGGCCGCGGGATCGGTGCTGCTCCTCCTGCTGCCGCAGCTCATGTATCCCGCGGGCAACATCAACGAAATCG ACCGCTGGATGGCGTGCCTCGTCTTTGTGATCGCGGGGACCGACATCGCCCTGGCCGCGTGCGCCTACAAGTTCGACATC GGCGCCACGGTGCGCGCGCGCGCGATCGTCGAACCGTGGGTGATCAGCGCCGCGGCGGCGGGATTCTGGTTCGTGTCGGC CGAAAACGGGCTGATGCTGTCCTATGCCGCGGCGATGCTCGGCGCCTTCCTGACCGCGCTCATCCCGATGGTCCGCCATT TCGGAGGGCCGGGCGTATGGCGACCGCACCCCGCGCAGCTCATCACGCTGGCGCGGCGCAACGCCCCGCTCGCCGCCGCC GACGCGATCGAATGGGGGACACGCCGCCTCGACCTCTTCATCCTTGGCCAGTTCACCTCGCCGACGATCTACGGCATCTA TTATATGGCGCAGCAGGTCGCCTCGCTGCCGCAAAAGCTCAAGACGAGCTTCGAGCCGATTCTCGGCCCCGTCATCACGC GCAATCTCGCCGAAAAGCGGCTTTCCGCGGTCGCGGCGCAGGTGAGCCAGGTCGGCTTCTGGATCATCGCCGCGCAAGCC GGGGTCGCGCTGGCGCTCGGCATTCCCGGTGAGGCGGTGATGGGGCTCGTCGGTCCCGAGTTTGTGAGCGGCACCGCCGC GCTCGCCTTCCTGCTCGCCGCCGAGGTCGTCGCTGCCACCGCCGTGGTCAGCGAAGCGGCGCTCGTCTATGTCGCGCGCC ACCGCAACCTGCTCATCAGCATCGCGACGCTCGCGCTGCAGGCGGCGCTCAGCGTCGCACTGATCCTGATCGCGCAGTCG ATGGGCTTGCCGCCGATCTATTATGCCGCGGCGGTCGCGCTCGCGCTGATGATCGCGCTCGGCTTTGCGTCGCTGGTCAA GGCGCGCCTCCTCTCGCACATCCTTGGCGCGCCGGTGAACAGCCTGCGCTGGGCGCTCGTCTGGGCGACCACCGGCGCCA CGGTGCTCGGCTGGGGCGCGACGCAGCTTCCCGAATGGGCCGAGCTGCTGATCGGCGTCCCCGTCATCCTCGGCATCTAT GGCTGGCTGATCTGGACGCGCGGCTTCGGCCCCGCCGACCGCGAGCTGTTCAAGAAGCACCCGCCGGACAAGGTCGTGGC GGTTTGA
Upstream 100 bases:
>100_bases CCGCTGCGACCCGAAGGGCAATGACAGATTTCCACCGATTGCCTGCCCCTTCCCGCCGCGCTAGGATGCCCGCCGGGGAT CAGCAGAAGGGGCGCGAGGC
Downstream 100 bases:
>100_bases CAGTCAGACGGCGGCTTCGGGGCGGTGAGCGGGCTGCCACCTCCCCGTCGCTGCGCGACAGCGACGATTGGGGAGCCACC TGCGACCACTTTCGGGTCCT
Product: O-antigen and teichoic acid-like export protein
Products: NA
Alternate protein names: O-Antigen And Teichoic Acid-Like Export Protein; Polysaccharide Transporter
Number of amino acids: Translated: 508; Mature: 507
Protein sequence:
>508_residues MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGL KRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDI GATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQA GVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQS MGLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY GWLIWTRGFGPADRELFKKHPPDKVVAV
Sequences:
>Translated_508_residues MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGL KRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDI GATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQA GVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQS MGLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY GWLIWTRGFGPADRELFKKHPPDKVVAV >Mature_507_residues SQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGLK RGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIG ATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAAD AIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQAG VALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSM GLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIYG WLIWTRGFGPADRELFKKHPPDKVVAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53758; Mature: 53627
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVG CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHH RFAFAVLVIELVAQLATLGLKRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLL HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH PQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIGATVRARAIVEPWVISAAAA HHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKR HHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAVAAQVSQVGFWIIAAQAGVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAAT HHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSMGLPPIYYAAAVALALMIAL HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY HHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH GWLIWTRGFGPADRELFKKHPPDKVVAV HHHHHHCCCCCCHHHHHHCCCCCCEECC >Mature Secondary Structure SQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVG CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHH RFAFAVLVIELVAQLATLGLKRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLL HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH PQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIGATVRARAIVEPWVISAAAA HHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKR HHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAVAAQVSQVGFWIIAAQAGVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAAT HHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSMGLPPIYYAAAVALALMIAL HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY HHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH GWLIWTRGFGPADRELFKKHPPDKVVAV HHHHHHCCCCCCHHHHHHCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA