BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is yhaQ [H]

Identifier: 103488344

GI number: 103488344

Start: 3019166

End: 3020122

Strand: Reverse

Name: yhaQ [H]

Synonym: Sala_2867

Alternate gene names: 103488344

Gene position: 3020122-3019166 (Counterclockwise)

Preceding gene: 103488347

Following gene: 103488343

Centisome position: 90.28

GC content: 66.56

Gene sequence:

>957_bases
TTGAGCGATTTCAGCGTCGAGGCGAACGGCCTCACCAAATATTTCGGCAATTTCAAGGCGGTCGATAACGTCAGCCTGGC
GGTGCCGGCGGGCAGCATCTATGGCGTTCTCGGCCCCAATGGCGCGGGCAAGACGACCAGCCTGCGGATGATGCTGGGCA
TCATCGACCCCGACGAAGGGACGAGTCGCCTGTTCGGCGGGCTGAAACCGCAAAGCGTGCGTGGTCGCATCGGCTATCTG
CCCGAAGAGCGTGGGCTCTATCCGGGCATGAAAGCGCGCGAGGCGATCGCCTTCATGGGGGCGCTGCGCGGGCTCGACTG
GTCGGAGGGCCGCCGCCGCGCCGCCGCTTTCATGGCCGAACTGGGGCTGGAGCGCGTGATCGACGAAAAGATCCGCAAGA
TGTCGAAGGGCATGGCGCAGATGGTTCAGCTGATCGGATCGATCGTCCACGCCCCCGACCTCATCGTCCTCGACGAGCCC
TTTTCGGGGCTCGATCCCGTCAATCAGGAGCGGCTCGAGATGCTCGTCCGGCGCGAACAGGCGCGCGGCGCGACGATCCT
CTTCTCGACGCATGTGATGGCGCACGCCGAGCGGCTGTGCGACCGCATCGCGGTCATCGCGCGCTCGGCGCGGCGCTTCG
AGGGCACGGTCGACGAAGCGCGCGCGCTGCTGCCGATGCAGGTGCGCTATACACCGCGCGAATCGGTCGATGCCGCTGCA
ATCGCGACCTGTCTGCCGACGAACGCCGAACACAGCGGCGATGCCTGGCATTTCACGATCGACGACAAGCATGTCGAGCC
CCTGCTGGCGCGGATCACCGCGAGCGGCCATGGAGTCAGCGGCCTGTCGATCAGCCGCCCCGCGCTGCACGACGCCTTTG
TCCATATCGTGCGGCAGGTCGATGCGGGTTTCGACGCCGACGCCACCGGGGACGCGATCGAGGAGGCAAGCGCGTGA

Upstream 100 bases:

>100_bases
GGTTTCGAGGGAAGGCAAGGCTTCGGCAACCATCGGCGCTCTATACGCGAGCCATCGCAGCGTGCCATAGTCTGCGGGAG
CGACGATCGGGGACCAGCAT

Downstream 100 bases:

>100_bases
CCCCGTTCCTGAAAAATATCCTGGTGGTTGCGCGGCGCGACTTTCTGGCGATCGTCGCAACCCCGGCCTTCCTCCTTTTC
CTTCTCGCGCCGCTGTTCAT

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSDFSVEANGLTKYFGNFKAVDNVSLAVPAGSIYGVLGPNGAGKTTSLRMMLGIIDPDEGTSRLFGGLKPQSVRGRIGYL
PEERGLYPGMKAREAIAFMGALRGLDWSEGRRRAAAFMAELGLERVIDEKIRKMSKGMAQMVQLIGSIVHAPDLIVLDEP
FSGLDPVNQERLEMLVRREQARGATILFSTHVMAHAERLCDRIAVIARSARRFEGTVDEARALLPMQVRYTPRESVDAAA
IATCLPTNAEHSGDAWHFTIDDKHVEPLLARITASGHGVSGLSISRPALHDAFVHIVRQVDAGFDADATGDAIEEASA

Sequences:

>Translated_318_residues
MSDFSVEANGLTKYFGNFKAVDNVSLAVPAGSIYGVLGPNGAGKTTSLRMMLGIIDPDEGTSRLFGGLKPQSVRGRIGYL
PEERGLYPGMKAREAIAFMGALRGLDWSEGRRRAAAFMAELGLERVIDEKIRKMSKGMAQMVQLIGSIVHAPDLIVLDEP
FSGLDPVNQERLEMLVRREQARGATILFSTHVMAHAERLCDRIAVIARSARRFEGTVDEARALLPMQVRYTPRESVDAAA
IATCLPTNAEHSGDAWHFTIDDKHVEPLLARITASGHGVSGLSISRPALHDAFVHIVRQVDAGFDADATGDAIEEASA
>Mature_317_residues
SDFSVEANGLTKYFGNFKAVDNVSLAVPAGSIYGVLGPNGAGKTTSLRMMLGIIDPDEGTSRLFGGLKPQSVRGRIGYLP
EERGLYPGMKAREAIAFMGALRGLDWSEGRRRAAAFMAELGLERVIDEKIRKMSKGMAQMVQLIGSIVHAPDLIVLDEPF
SGLDPVNQERLEMLVRREQARGATILFSTHVMAHAERLCDRIAVIARSARRFEGTVDEARALLPMQVRYTPRESVDAAAI
ATCLPTNAEHSGDAWHFTIDDKHVEPLLARITASGHGVSGLSISRPALHDAFVHIVRQVDAGFDADATGDAIEEASA

Specific function: Unknown

COG id: COG4152

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=305, Percent_Identity=28.1967213114754, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI27477115, Length=304, Percent_Identity=27.9605263157895, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI6005701, Length=306, Percent_Identity=27.7777777777778, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI153792144, Length=212, Percent_Identity=30.6603773584906, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI27262624, Length=209, Percent_Identity=28.2296650717703, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI27262626, Length=209, Percent_Identity=28.2296650717703, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI31657092, Length=211, Percent_Identity=28.9099526066351, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI45446740, Length=333, Percent_Identity=25.8258258258258, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI47078218, Length=333, Percent_Identity=25.8258258258258, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI21536376, Length=193, Percent_Identity=31.6062176165803, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=32.3383084577114, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI150417984, Length=315, Percent_Identity=26.984126984127, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI62526033, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI171184400, Length=189, Percent_Identity=30.6878306878307, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87081782, Length=252, Percent_Identity=32.1428571428571, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=33.7837837837838, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=30.1801801801802, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786319, Length=207, Percent_Identity=28.5024154589372, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=28.8461538461538, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=32.3943661971831, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=28.3185840707965, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788450, Length=209, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081709, Length=206, Percent_Identity=29.6116504854369, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786398, Length=228, Percent_Identity=31.140350877193, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=30.622009569378, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=31.4009661835749, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788472, Length=216, Percent_Identity=28.2407407407407, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790190, Length=210, Percent_Identity=28.0952380952381, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=29.4605809128631, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=25.7777777777778, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790467, Length=208, Percent_Identity=29.8076923076923, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=28.3464566929134, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=33.6538461538462, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=26.2886597938144, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=25.9433962264151, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=26.5765765765766, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789991, Length=215, Percent_Identity=27.4418604651163, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789586, Length=221, Percent_Identity=31.6742081447964, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=29.2237442922374, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=24.4725738396624, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787370, Length=204, Percent_Identity=27.4509803921569, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=212, Percent_Identity=28.3018867924528, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787089, Length=214, Percent_Identity=24.2990654205607, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=212, Percent_Identity=26.8867924528302, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=23.5849056603774, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786975, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082267, Length=201, Percent_Identity=29.8507462686567, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787759, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787041, Length=207, Percent_Identity=28.0193236714976, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=24.0740740740741, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788897, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI2367384, Length=73, Percent_Identity=41.0958904109589, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1786803, Length=202, Percent_Identity=24.2574257425743, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=327, Percent_Identity=24.4648318042813, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI115533608, Length=239, Percent_Identity=28.8702928870293, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=29.4392523364486, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=29.4392523364486, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=29.4392523364486, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17510237, Length=202, Percent_Identity=27.2277227722772, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534520, Length=220, Percent_Identity=28.1818181818182, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574150, Length=220, Percent_Identity=30.4545454545455, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI116007328, Length=220, Percent_Identity=30.4545454545455, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24643674, Length=199, Percent_Identity=33.1658291457286, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24666092, Length=243, Percent_Identity=30.8641975308642, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI221512771, Length=210, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24648314, Length=204, Percent_Identity=28.921568627451, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24650855, Length=189, Percent_Identity=32.8042328042328, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650853, Length=189, Percent_Identity=32.8042328042328, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362751, Length=189, Percent_Identity=32.8042328042328, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24582014, Length=204, Percent_Identity=31.8627450980392, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24582012, Length=204, Percent_Identity=31.8627450980392, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI85725262, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573571, Length=204, Percent_Identity=26.4705882352941, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007184, Length=188, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221500365, Length=188, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573573, Length=199, Percent_Identity=26.1306532663317, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571209, Length=216, Percent_Identity=25.462962962963, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 34423; Mature: 34292

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFSVEANGLTKYFGNFKAVDNVSLAVPAGSIYGVLGPNGAGKTTSLRMMLGIIDPDEG
CCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCC
TSRLFGGLKPQSVRGRIGYLPEERGLYPGMKAREAIAFMGALRGLDWSEGRRRAAAFMAE
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGLERVIDEKIRKMSKGMAQMVQLIGSIVHAPDLIVLDEPFSGLDPVNQERLEMLVRREQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
ARGATILFSTHVMAHAERLCDRIAVIARSARRFEGTVDEARALLPMQVRYTPRESVDAAA
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCCHHHH
IATCLPTNAEHSGDAWHFTIDDKHVEPLLARITASGHGVSGLSISRPALHDAFVHIVRQV
HHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
DAGFDADATGDAIEEASA
HCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SDFSVEANGLTKYFGNFKAVDNVSLAVPAGSIYGVLGPNGAGKTTSLRMMLGIIDPDEG
CCCCCCCCCHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCC
TSRLFGGLKPQSVRGRIGYLPEERGLYPGMKAREAIAFMGALRGLDWSEGRRRAAAFMAE
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGLERVIDEKIRKMSKGMAQMVQLIGSIVHAPDLIVLDEPFSGLDPVNQERLEMLVRREQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
ARGATILFSTHVMAHAERLCDRIAVIARSARRFEGTVDEARALLPMQVRYTPRESVDAAA
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEECCCCCCHHHH
IATCLPTNAEHSGDAWHFTIDDKHVEPLLARITASGHGVSGLSISRPALHDAFVHIVRQV
HHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
DAGFDADATGDAIEEASA
HCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]