| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488347
Identifier: 103488347
GI number: 103488347
Start: 3021514
End: 3021888
Strand: Reverse
Name: 103488347
Synonym: Sala_2870
Alternate gene names: NA
Gene position: 3021888-3021514 (Counterclockwise)
Preceding gene: 103488348
Following gene: 103488344
Centisome position: 90.34
GC content: 71.73
Gene sequence:
>375_bases ATGACCAATAATAGACGGTTGGCTGCCGCTGCGGGCCTGGCCCTGACGCTCGGCGCATGCGCGGGCCCGACGATCCCGCG CCCCGCCGCGACCCCGCCCGCCGCCGCGACCCCGCCCGTCGTGCGACCGGTGCAGAACAACGCGCTGATCGGCAGCAGCG TCGACGCGGTCGGGCGGATGTTCGGCAAGCCGCGACTCGACGTGACCGAAGGCGCGGGGCGCAAGCTGCAGTTCGCGGGA CCGCGCTGCATCCTCGACATTTATTTCTATGCCCCGCGCGCGGGCGCCGATCCCGTTGCCACCCATGTCGATGCGCGCGT GCCCGACGGTCGCAACGCCGACGTGAACAGTTGCGCCGAGGCGCTACGGCGCTAG
Upstream 100 bases:
>100_bases GCCGCAGGCTTTGCGATGCCCGTCGCCAATTTGTTGGCGCCGCTGCTCAGCGCCGCTATGGCCGTCCACATGCTGCACCT CGGCGACGGGAACAAGAAAA
Downstream 100 bases:
>100_bases AGCGCGATGACATGATATTGATCCACCGTGACGGAGGCGATTTTGGCCGAGTGCGAGGCGCGAGGAGCGGCGCGATGCGG GACATCGCGCCCGACGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MTNNRRLAAAAGLALTLGACAGPTIPRPAATPPAAATPPVVRPVQNNALIGSSVDAVGRMFGKPRLDVTEGAGRKLQFAG PRCILDIYFYAPRAGADPVATHVDARVPDGRNADVNSCAEALRR
Sequences:
>Translated_124_residues MTNNRRLAAAAGLALTLGACAGPTIPRPAATPPAAATPPVVRPVQNNALIGSSVDAVGRMFGKPRLDVTEGAGRKLQFAG PRCILDIYFYAPRAGADPVATHVDARVPDGRNADVNSCAEALRR >Mature_123_residues TNNRRLAAAAGLALTLGACAGPTIPRPAATPPAAATPPVVRPVQNNALIGSSVDAVGRMFGKPRLDVTEGAGRKLQFAGP RCILDIYFYAPRAGADPVATHVDARVPDGRNADVNSCAEALRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12814; Mature: 12683
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNNRRLAAAAGLALTLGACAGPTIPRPAATPPAAATPPVVRPVQNNALIGSSVDAVGRM CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHH FGKPRLDVTEGAGRKLQFAGPRCILDIYFYAPRAGADPVATHVDARVPDGRNADVNSCAE HCCCCCEEECCCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH ALRR HHCC >Mature Secondary Structure TNNRRLAAAAGLALTLGACAGPTIPRPAATPPAAATPPVVRPVQNNALIGSSVDAVGRM CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHH FGKPRLDVTEGAGRKLQFAGPRCILDIYFYAPRAGADPVATHVDARVPDGRNADVNSCAE HCCCCCEEECCCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH ALRR HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA