| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mnmG
Identifier: 103488331
GI number: 103488331
Start: 3003081
End: 3004940
Strand: Direct
Name: mnmG
Synonym: Sala_2854
Alternate gene names: 103488331
Gene position: 3003081-3004940 (Clockwise)
Preceding gene: 103488330
Following gene: 103488332
Centisome position: 89.77
GC content: 68.82
Gene sequence:
>1860_bases ATGCACAGCAGCGCAACATTCGATGTCATCGTCGTTGGCGGTGGACATGCCGGGACCGAGGCTGCCGCGGCCGCGGCGCG GCTGGGCGCGCGGGTGGCGCTGGTCAGTTTCGACCCGACGCTGATCGGAACGATGTCGTGCAACCCGGCGATCGGCGGGC TCGGCAAGGGCCATTTGATGCGCGAGGTCGACGCGCTCGACGGGTGGATGGCGCGCGCGGCCGACGCCGCCGCGATCCAT TACCGGATGCTCAACGCATCGAAGGGTGCGGCGGTGCAGGGTCCGCGCATCCAGGCCGATCGCAAGCTCTATCGCGCCGC GATCCAGACGCTGCTGGCAGCGGAGGAGGGGATCACGGTCGTTGCAGGCGAAGCGGCGGCTCTGCGACTATCCAACGGGG GGCGGATCGCAGGACTCGATCTCGCCGACGGGACGGCGCTCACGGCGCGCGCGGTTGTGCTCGCGACGGGTACTTTCCTC GGCGGACGACTGTTCCGCGGCGAAGAACGGATGGAGGGTGGCCGGATCGGCGAAGCGGGGTCGCACCGTCTCGCCGGGCA GCTTCGCGCCGCCCACCTGCCGATGGCGCGGCTCAAGACGGGCACGCCGCCGCGCCTCGATGGCCGCACGATCGACTGGG CGCGGTTGCAGGAACAGCCGTCGGATGGCGGACGCTGGACCTGTTCCACGTGGAACAACGCGCGGACGGTGCCGCAGATT TTCTGCGCAATCACGCGCACCAACGCCGAATCGCACCGGATCATCGCCGAAAACCTGCATCGCTCGCCGCTCTTTACCGG CGCGATCGGTGCGGCGGGGCCGCGTTATTGCCCGTCGATCGAGGACAAGATCCACCGCTTTGCCGATCGCGACGGGCATC AGGTGTTTCTGGAGCCCGAGGGGCTTGATACGCATCTGGTCTATCCCAATGGCATTTCGACTTCGCTGCCCGCCGATGTG CAACTGGCGATGCTGCGCACGATCGAGGGGCTGGAGGCGGTCGAGATGGTCGTGCCCGGCTATGCGGTCGAATATGACCA TATCGACCCGCGTGCGCTCGACCGGACGTTGCAGGTGCGCGCGATGCCGGGGGTCTGGTGTGCGGGACAGATCAACGGCA CGACGGGATATGAGGAGGCCGCGGCGCAGGGGCTGGTCGCGGGCGCCAATGCCGCGCTCGCCGTGCAGGGGCGCGAGCCG CTGATCCTCGACCGGAGCGAATCCTATATCGGGGTGATGGTCGACGACCTGGTGTTGCAGGGCGTGACCGAGCCGTACCG GATGCTCACCGCGCGCGCCGAATATCGGCTGCGGCTGCGCGCCGACAATGCGGCGACCCGGCTGACGCCGAAGGGGATTG CACTGGGGCTGGTGCGGCCGGCGACCGCGGCGCTGTTTGCCAGGAGGATGGCCGAGCGGGCGCGGGCCGGGGCGCTGCTC GAAGCGCCGGTGGCGACCGCCGATTATGGGGCGATCGGCTTGCCGCTGCCCGGCGACGGGATCGCGCGGCGGCGAATCGA CCTGTTGCGCTTTCCCGGTGCGACGGTCGAGCGGTTGACGATTCTGGTTCCCGAGATCGAATCGATCGATCGCGCGATCC TGTCCGAAGTCGTCGAAGATGCGCATTATGCGCCCTATATCGCGCGGCACGAAGCCGAGCTGCGCGCGCTCGCAGCAAAT GAGGCGATCCTGCTCGATCCCGCGCTCGACTATGCCGCGATCGGCGGCCTGTCGCGCGAAATGGTCGAGCGGCTGAGCAA GGCACGCCCCGAAACGCTGGGACAGGCGGCGCGAATTGATGGCGTGACGCCCGCGGCGCTGACGGCGATCATGGTGCATA GCCGGCGGCGCGCGGCCTGA
Upstream 100 bases:
>100_bases TGGGCGATTCTGCATCGGCAAATGACGTTCCACGTGAAACATCGTGCAGATCGCAGCGCAGTGGATTCGCCGTCGGCTTT ACGCTAAGGGCGCCCCGATC
Downstream 100 bases:
>100_bases ATCGGCGAAGACAGGTTCTGGAATCTCACGCAAAGGCGCAAAGGCGCGAAGAAGGATGATAATCCCGCATCGTGCGGATG GTGGAAAGAACGATGTGAGC
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A
Number of amino acids: Translated: 619; Mature: 619
Protein sequence:
>619_residues MHSSATFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLMREVDALDGWMARAADAAAIH YRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITVVAGEAAALRLSNGGRIAGLDLADGTALTARAVVLATGTFL GGRLFRGEERMEGGRIGEAGSHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQI FCAITRTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPEGLDTHLVYPNGISTSLPADV QLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVRAMPGVWCAGQINGTTGYEEAAAQGLVAGANAALAVQGREP LILDRSESYIGVMVDDLVLQGVTEPYRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALL EAPVATADYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVEDAHYAPYIARHEAELRALAAN EAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARIDGVTPAALTAIMVHSRRRAA
Sequences:
>Translated_619_residues MHSSATFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLMREVDALDGWMARAADAAAIH YRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITVVAGEAAALRLSNGGRIAGLDLADGTALTARAVVLATGTFL GGRLFRGEERMEGGRIGEAGSHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQI FCAITRTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPEGLDTHLVYPNGISTSLPADV QLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVRAMPGVWCAGQINGTTGYEEAAAQGLVAGANAALAVQGREP LILDRSESYIGVMVDDLVLQGVTEPYRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALL EAPVATADYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVEDAHYAPYIARHEAELRALAAN EAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARIDGVTPAALTAIMVHSRRRAA >Mature_619_residues MHSSATFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLMREVDALDGWMARAADAAAIH YRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITVVAGEAAALRLSNGGRIAGLDLADGTALTARAVVLATGTFL GGRLFRGEERMEGGRIGEAGSHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQI FCAITRTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPEGLDTHLVYPNGISTSLPADV QLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVRAMPGVWCAGQINGTTGYEEAAAQGLVAGANAALAVQGREP LILDRSESYIGVMVDDLVLQGVTEPYRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALL EAPVATADYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVEDAHYAPYIARHEAELRALAAN EAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARIDGVTPAALTAIMVHSRRRAA
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family
Homologues:
Organism=Homo sapiens, GI74024895, Length=632, Percent_Identity=40.6645569620253, Blast_Score=429, Evalue=1e-120, Organism=Homo sapiens, GI19882217, Length=657, Percent_Identity=39.117199391172, Blast_Score=416, Evalue=1e-116, Organism=Homo sapiens, GI183227703, Length=672, Percent_Identity=38.2440476190476, Blast_Score=410, Evalue=1e-114, Organism=Escherichia coli, GI2367273, Length=626, Percent_Identity=47.7635782747604, Blast_Score=535, Evalue=1e-153, Organism=Caenorhabditis elegans, GI17534255, Length=616, Percent_Identity=39.9350649350649, Blast_Score=423, Evalue=1e-118, Organism=Saccharomyces cerevisiae, GI6321202, Length=628, Percent_Identity=41.2420382165605, Blast_Score=471, Evalue=1e-133, Organism=Drosophila melanogaster, GI24658174, Length=629, Percent_Identity=42.4483306836248, Blast_Score=430, Evalue=1e-120,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MNMG_SPHAL (Q1GP63)
Other databases:
- EMBL: CP000356 - RefSeq: YP_617892.1 - ProteinModelPortal: Q1GP63 - SMR: Q1GP63 - GeneID: 4080647 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_2854 - NMPDR: fig|317655.9.peg.2717 - HOGENOM: HBG284774 - OMA: GIQFRVL - ProtClustDB: PRK05192 - BioCyc: SALA317655:SALA_2854-MONOMER - GO: GO:0005737 - HAMAP: MF_00129 - InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 - TIGRFAMs: TIGR00136
Pfam domain/function: PF01134 GIDA
EC number: NA
Molecular weight: Translated: 65873; Mature: 65873
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSSATFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLM CCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCEEEEEECCCCCCCCCCCCHHH REVDALDGWMARAADAAAIHYRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITV HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE VAGEAAALRLSNGGRIAGLDLADGTALTARAVVLATGTFLGGRLFRGEERMEGGRIGEAG EECCEEEEEECCCCEEEEEECCCCCHHHHEEEEEEECHHHCCEEECCHHHCCCCCCCCCC SHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQI CCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHH FCAITRTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPE HEEHEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLDTHLVYPNGISTSLPADVQLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVR CCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCHHHHCCEEEEE AMPGVWCAGQINGTTGYEEAAAQGLVAGANAALAVQGREPLILDRSESYIGVMVDDLVLQ ECCCEEEEEEECCCCCHHHHHHCCEEECCCEEEEECCCCCEEEECCCCEEEHHHHHHHHH GVTEPYRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALL CCCHHHHHHHHCCEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEE EAPVATADYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVED ECCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH AHYAPYIARHEAELRALAANEAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARID CCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCHHHHHHHHHHCCCHHHCHHHHCC GVTPAALTAIMVHSRRRAA CCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MHSSATFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLM CCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCEEEEEECCCCCCCCCCCCHHH REVDALDGWMARAADAAAIHYRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITV HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE VAGEAAALRLSNGGRIAGLDLADGTALTARAVVLATGTFLGGRLFRGEERMEGGRIGEAG EECCEEEEEECCCCEEEEEECCCCCHHHHEEEEEEECHHHCCEEECCHHHCCCCCCCCCC SHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQI CCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHH FCAITRTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPE HEEHEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLDTHLVYPNGISTSLPADVQLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVR CCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCHHHHCCEEEEE AMPGVWCAGQINGTTGYEEAAAQGLVAGANAALAVQGREPLILDRSESYIGVMVDDLVLQ ECCCEEEEEEECCCCCHHHHHHCCEEECCCEEEEECCCCCEEEECCCCEEEHHHHHHHHH GVTEPYRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALL CCCHHHHHHHHCCEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEE EAPVATADYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVED ECCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH AHYAPYIARHEAELRALAANEAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARID CCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCHHHHHHHHHHCCCHHHCHHHHCC GVTPAALTAIMVHSRRRAA CCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA