| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488325
Identifier: 103488325
GI number: 103488325
Start: 2999311
End: 2999733
Strand: Direct
Name: 103488325
Synonym: Sala_2848
Alternate gene names: NA
Gene position: 2999311-2999733 (Clockwise)
Preceding gene: 103488324
Following gene: 103488326
Centisome position: 89.66
GC content: 54.14
Gene sequence:
>423_bases TTGCCGTCGATTGAGGGTCGACACGACGGGCGACGCATCGTCACCGATGTTGCGGTGTTAGCCGCGGAAAATCCGGCGGA CCTCAGCCATGTGATCGGTCGAGCGCTGATCGATACCGGCGCCACGAGCAGTGGGGTTGGGCCAACTATCGTCACGCAAC TTGGTTTGCGGAGCTACGGAAAGAGGCCGCTCGGATCTGCGACCGACGAACGCATGATGCCTTATTATTTTTTTCGGTTG GGTTTCCTTGGGTATCGCGACGCAAATGGAATGATCGAAACACACGCATTTCCTTATGTTCTAGGTGAGTGTGACGGGTT CGGCTGGCCGATGGCGCGTCATTTTGACGTCATTATCGGAATGGATATCCTCGGGAAATGTCGGTTTACAGTCGATCTCA ATTTTTGGTCGATCGAGTTCTGA
Upstream 100 bases:
>100_bases CCCGGCGAGGCATTGCGGACTGCACTCGCTCAGTTTCCCGATCGAATTTTTTCGATTCAGCAAGTCGTCGATGAACCTCT CGATTTAGGATTTCTATCGC
Downstream 100 bases:
>100_bases CAATAGAGTTGTGGGATGCTTGAAGCCTCCCGTCTATTTCCCATCTCTCGGACATGTCCGCTCTCCACATGACCCGCGTC GCCGTCGGCTGTTCCGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MPSIEGRHDGRRIVTDVAVLAAENPADLSHVIGRALIDTGATSSGVGPTIVTQLGLRSYGKRPLGSATDERMMPYYFFRL GFLGYRDANGMIETHAFPYVLGECDGFGWPMARHFDVIIGMDILGKCRFTVDLNFWSIEF
Sequences:
>Translated_140_residues MPSIEGRHDGRRIVTDVAVLAAENPADLSHVIGRALIDTGATSSGVGPTIVTQLGLRSYGKRPLGSATDERMMPYYFFRL GFLGYRDANGMIETHAFPYVLGECDGFGWPMARHFDVIIGMDILGKCRFTVDLNFWSIEF >Mature_139_residues PSIEGRHDGRRIVTDVAVLAAENPADLSHVIGRALIDTGATSSGVGPTIVTQLGLRSYGKRPLGSATDERMMPYYFFRLG FLGYRDANGMIETHAFPYVLGECDGFGWPMARHFDVIIGMDILGKCRFTVDLNFWSIEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15491; Mature: 15360
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSIEGRHDGRRIVTDVAVLAAENPADLSHVIGRALIDTGATSSGVGPTIVTQLGLRSYG CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC KRPLGSATDERMMPYYFFRLGFLGYRDANGMIETHAFPYVLGECDGFGWPMARHFDVIIG CCCCCCCCCCCCCHHHHHHHHHCEEECCCCEEECCCCCEEEECCCCCCCCCHHHEEEEEC MDILGKCRFTVDLNFWSIEF CCCCCEEEEEEEEEEEEEEC >Mature Secondary Structure PSIEGRHDGRRIVTDVAVLAAENPADLSHVIGRALIDTGATSSGVGPTIVTQLGLRSYG CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC KRPLGSATDERMMPYYFFRLGFLGYRDANGMIETHAFPYVLGECDGFGWPMARHFDVIIG CCCCCCCCCCCCCHHHHHHHHHCEEECCCCEEECCCCCEEEECCCCCCCCCHHHEEEEEC MDILGKCRFTVDLNFWSIEF CCCCCEEEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA