| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488326
Identifier: 103488326
GI number: 103488326
Start: 2999787
End: 3000188
Strand: Direct
Name: 103488326
Synonym: Sala_2849
Alternate gene names: NA
Gene position: 2999787-3000188 (Clockwise)
Preceding gene: 103488325
Following gene: 103488329
Centisome position: 89.68
GC content: 63.68
Gene sequence:
>402_bases ATGTCCGCTCTCCACATGACCCGCGTCGCCGTCGGCTGTTCCGATTATCCGGCGCTGGAGGCGCGCATTGCCACCTATGC AAAGGATGGTGAGATCCGTTTTACGACGCGCTTCAAGCCCAAACGCGCCGACGAGCTGATCGGCGGCAGGCTGCATTTCA TCGTCAAACATATGCTCGTCGCGTGCGTGCAAATCCTGCGCTTCGACGATCGCAGCGACGGGCGGGTCGATATCGTCTGT GTCGCCGACCTCGAGCGCGTGCATCCGCAGCCGAAGCGCGCGCATCAGGGATGGCGCTATCTGGCCGATGCCGACGCGCC CAAGGGGCTGGAGGATGGAAGCGGCATCGACGAGCTGCCGCCCGAACTCTATCGCGAACTCGCCGGGCTCAGCCTGATCT AG
Upstream 100 bases:
>100_bases AATGTCGGTTTACAGTCGATCTCAATTTTTGGTCGATCGAGTTCTGACAATAGAGTTGTGGGATGCTTGAAGCCTCCCGT CTATTTCCCATCTCTCGGAC
Downstream 100 bases:
>100_bases CCCGCCTGCGCCGCGAGCATCGCGGCCATTTTTTCCCAGACCTTGTTGATGGCCTTGAGCGGGCGCACCATCACCTTGAA ATCCTCGATTTTGCCCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MSALHMTRVAVGCSDYPALEARIATYAKDGEIRFTTRFKPKRADELIGGRLHFIVKHMLVACVQILRFDDRSDGRVDIVC VADLERVHPQPKRAHQGWRYLADADAPKGLEDGSGIDELPPELYRELAGLSLI
Sequences:
>Translated_133_residues MSALHMTRVAVGCSDYPALEARIATYAKDGEIRFTTRFKPKRADELIGGRLHFIVKHMLVACVQILRFDDRSDGRVDIVC VADLERVHPQPKRAHQGWRYLADADAPKGLEDGSGIDELPPELYRELAGLSLI >Mature_132_residues SALHMTRVAVGCSDYPALEARIATYAKDGEIRFTTRFKPKRADELIGGRLHFIVKHMLVACVQILRFDDRSDGRVDIVCV ADLERVHPQPKRAHQGWRYLADADAPKGLEDGSGIDELPPELYRELAGLSLI
Specific function: Unknown
COG id: COG5458
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14899; Mature: 14768
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALHMTRVAVGCSDYPALEARIATYAKDGEIRFTTRFKPKRADELIGGRLHFIVKHMLV CCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHH ACVQILRFDDRSDGRVDIVCVADLERVHPQPKRAHQGWRYLADADAPKGLEDGSGIDELP HHHHHHHCCCCCCCCEEEEEECCHHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCC PELYRELAGLSLI HHHHHHHHCCCCC >Mature Secondary Structure SALHMTRVAVGCSDYPALEARIATYAKDGEIRFTTRFKPKRADELIGGRLHFIVKHMLV CCHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHH ACVQILRFDDRSDGRVDIVCVADLERVHPQPKRAHQGWRYLADADAPKGLEDGSGIDELP HHHHHHHCCCCCCCCEEEEEECCHHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCC PELYRELAGLSLI HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA