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The map label for this gene is dnaQ [H]

Identifier: 103488315

GI number: 103488315

Start: 2991379

End: 2992074

Strand: Reverse

Name: dnaQ [H]

Synonym: Sala_2838

Alternate gene names: 103488315

Gene position: 2992074-2991379 (Counterclockwise)

Preceding gene: 103488316

Following gene: 103488314

Centisome position: 89.44

GC content: 65.37

Gene sequence:

>696_bases
ATGCGCGAGATTATCTTCGATACCGAAACCACGGGTTTCGATCCCAGGAACGGGGACCGGCTGGTCGAAATCGGATGTGT
CGAACTGATCGACCGCCGCGAAACGGGCGTCACCTTCCATGCCTATTTCAACCCCGAGCGCGACATGCCCGCCGCCGCCG
AGGCGGTTCACGGCCTGTCGAGCCAGTTTCTGTCGGACAAGCCGCTCTTTGCGGCGCGCGTCGACGAACTGCTCGACTTT
TTCGGCGACGCGCCGCTGATTGCGCACAATGCCGCGTTCGATTTCGGCTTCGTCAATGCCGAGCTGGAACGGATCGGGCG
TCCCCCGCTCGACATGGCGCGCATGTGCTGTACCGTCCAGATGGCCCGGAAGCTCCATCCCGGCGCGAAGCACAGCCTCG
ACGCGCTCTGCACCCGCTATGGCATCGACCGCAGCCACCGCATCAAGCATGGCGCGCTGCTCGACGCCGAACTGCTCGCG
CACCTTTATATCGAGATGACCGGCGGGCGGCAGATCGGCCTTGGCCTCGCATCCTCGTCGGCGGCGTTGCCGACCGCGAG
CCTGCTGGCCGCTCGGCGCGATCCGGCGCGGCCCTTTCGCGAACCCAGACCCCATATGGCGTCGGCTGCTGAACTCGCAC
GCCACGCCGAGTTTGTCGCAGGGCTCAACCAGCCACTGTGGCTCGATACGGTGTGA

Upstream 100 bases:

>100_bases
TTCATCATCGAGACGGGCCGCCCGAAAAGCGAAACACAGCGTCAGATTCGCTTCATCGCCTCTTGTTTCCACGCCCGATA
GGGTCCAGATTATTATTTCG

Downstream 100 bases:

>100_bases
CGACTCCCCCATCGTCGTCGCGCCGGCCATAGAAGGAGAAGAAAAATGGAAATCCGCGTCTCTGGCCACCAGATCGAAAC
CGGCGAAGCGCTGCAGGCGC

Product: DNA polymerase III, epsilon subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLSSQFLSDKPLFAARVDELLDF
FGDAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLA
HLYIEMTGGRQIGLGLASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQPLWLDTV

Sequences:

>Translated_231_residues
MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLSSQFLSDKPLFAARVDELLDF
FGDAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLA
HLYIEMTGGRQIGLGLASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQPLWLDTV
>Mature_231_residues
MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLSSQFLSDKPLFAARVDELLDF
FGDAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLA
HLYIEMTGGRQIGLGLASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQPLWLDTV

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=176, Percent_Identity=46.0227272727273, Blast_Score=163, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 25471; Mature: 25471

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLS
CCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHH
SQFLSDKPLFAARVDELLDFFGDAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQ
HHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
MARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMTGGRQIGLGLASSS
HHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCC
AALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQPLWLDTV
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure
MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLS
CCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHH
SQFLSDKPLFAARVDELLDFFGDAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQ
HHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
MARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMTGGRQIGLGLASSS
HHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCC
AALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQPLWLDTV
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]