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The map label for this gene is dapD [H]

Identifier: 103488305

GI number: 103488305

Start: 2984308

End: 2985150

Strand: Direct

Name: dapD [H]

Synonym: Sala_2828

Alternate gene names: 103488305

Gene position: 2984308-2985150 (Clockwise)

Preceding gene: 103488304

Following gene: 103488307

Centisome position: 89.21

GC content: 68.09

Gene sequence:

>843_bases
ATGACCGCCGACCTTCAAGCCACGATCGAAGCCGCATGGGACGCGCGCGACACATTGGGCCTCGCCACGACCGGTGCGGT
GCGCGAGGCGGTCGATACCGCGATCGCCGGACTCGACGATGGCAGCTTTCGTGTCGCAGAGCGCGATGCGCGCGGTACGT
GGCAGGTCAACCAGTGGCTCAAAAAGGCGGTGCTGCTGTCGTTCCGCCTCAATGACATGGAGATCATCGAGGGCGGCGCC
GACGGCGCGACCTGGTGGGACAAGGTGCCTTCGAAATTCGCCGGCTGGGGCGAGAATCGTTTCCGCGACGCCGGCTTTCG
CGCCGTCCCCGGTTCGATCGTCCGCCGCGGCGCCTTCATCAGCAAGGGCGCGGTGCTGATGCCGAGTTTCGTGAATATCG
GCGCTTATGTCGGCGAGGGGTCGATGGTCGACGCCTGGGCGACCGTGGGCAGCTGCGCGCAGATCGGCGCGAACGTCCAT
CTGTCGGGCGGCGCGGGAATCGGCGGCGTATTGGAACCGCTGCAGGCCGGGCCGGTGGTGATCGAGGACGGCGCCTTCAT
CGGCGCGCGCGCCGAGGTCGCCGAGGGCGTGATCGTGCGCGAGGGTGCGGTGCTGTCGATGGGCGTCTATCTCGGCGCAT
CGACCAAGATCATCGACCGCGCGACGGGCGAGGTCTTCGTCGGCGAGGTTCCCGCTTACTCGGTCGTCGTGCCGGGATCG
CTGCCCGGCAAGCCGCTACCCGACGGCACGCCCGGCCCGTCGCTTTACTGTGCGGTGATCGTCAAGCGCGTCGACGCGCA
GACGCGCGCCAAGACGGGAATCAACGAGCTGCTGCGCGATTGA

Upstream 100 bases:

>100_bases
GCGAAAGCGGCCATCGGGACCACCTGCCCGACCATGTCGATTTCCACGCGACCGACATTGCCGACTGGCTCGACAACCTG
CCTTCACCATGGGGAATCGC

Downstream 100 bases:

>100_bases
CGGGACTTACCGCTCGCTGAGATAATAGCGCTCGCGCGCGCTCAGATCGTCGTTGATTTCATAAACGATCGGCTGGCCGG
TCGGGATTTCGAGGCCGGTG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTADLQATIEAAWDARDTLGLATTGAVREAVDTAIAGLDDGSFRVAERDARGTWQVNQWLKKAVLLSFRLNDMEIIEGGA
DGATWWDKVPSKFAGWGENRFRDAGFRAVPGSIVRRGAFISKGAVLMPSFVNIGAYVGEGSMVDAWATVGSCAQIGANVH
LSGGAGIGGVLEPLQAGPVVIEDGAFIGARAEVAEGVIVREGAVLSMGVYLGASTKIIDRATGEVFVGEVPAYSVVVPGS
LPGKPLPDGTPGPSLYCAVIVKRVDAQTRAKTGINELLRD

Sequences:

>Translated_280_residues
MTADLQATIEAAWDARDTLGLATTGAVREAVDTAIAGLDDGSFRVAERDARGTWQVNQWLKKAVLLSFRLNDMEIIEGGA
DGATWWDKVPSKFAGWGENRFRDAGFRAVPGSIVRRGAFISKGAVLMPSFVNIGAYVGEGSMVDAWATVGSCAQIGANVH
LSGGAGIGGVLEPLQAGPVVIEDGAFIGARAEVAEGVIVREGAVLSMGVYLGASTKIIDRATGEVFVGEVPAYSVVVPGS
LPGKPLPDGTPGPSLYCAVIVKRVDAQTRAKTGINELLRD
>Mature_279_residues
TADLQATIEAAWDARDTLGLATTGAVREAVDTAIAGLDDGSFRVAERDARGTWQVNQWLKKAVLLSFRLNDMEIIEGGAD
GATWWDKVPSKFAGWGENRFRDAGFRAVPGSIVRRGAFISKGAVLMPSFVNIGAYVGEGSMVDAWATVGSCAQIGANVHL
SGGAGIGGVLEPLQAGPVVIEDGAFIGARAEVAEGVIVREGAVLSMGVYLGASTKIIDRATGEVFVGEVPAYSVVVPGSL
PGKPLPDGTPGPSLYCAVIVKRVDAQTRAKTGINELLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=276, Percent_Identity=63.768115942029, Blast_Score=315, Evalue=3e-87,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29156; Mature: 29025

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADLQATIEAAWDARDTLGLATTGAVREAVDTAIAGLDDGSFRVAERDARGTWQVNQWL
CCCCHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
KKAVLLSFRLNDMEIIEGGADGATWWDKVPSKFAGWGENRFRDAGFRAVPGSIVRRGAFI
HHHHHHHHCCCCEEEEECCCCCCHHHHHCCHHHHCCCCCHHHCCCCCCCCHHHHHCCCHH
SKGAVLMPSFVNIGAYVGEGSMVDAWATVGSCAQIGANVHLSGGAGIGGVLEPLQAGPVV
CCCCEECCHHHHHCEEECCCCEEHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCEE
IEDGAFIGARAEVAEGVIVREGAVLSMGVYLGASTKIIDRATGEVFVGEVPAYSVVVPGS
EECCCEECCHHHHHCCEEEECCCEEEEEEEECCCCCEECCCCCCEEEECCCEEEEEECCC
LPGKPLPDGTPGPSLYCAVIVKRVDAQTRAKTGINELLRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TADLQATIEAAWDARDTLGLATTGAVREAVDTAIAGLDDGSFRVAERDARGTWQVNQWL
CCCHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
KKAVLLSFRLNDMEIIEGGADGATWWDKVPSKFAGWGENRFRDAGFRAVPGSIVRRGAFI
HHHHHHHHCCCCEEEEECCCCCCHHHHHCCHHHHCCCCCHHHCCCCCCCCHHHHHCCCHH
SKGAVLMPSFVNIGAYVGEGSMVDAWATVGSCAQIGANVHLSGGAGIGGVLEPLQAGPVV
CCCCEECCHHHHHCEEECCCCEEHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCEE
IEDGAFIGARAEVAEGVIVREGAVLSMGVYLGASTKIIDRATGEVFVGEVPAYSVVVPGS
EECCCEECCHHHHHCCEEEECCCEEEEEEEECCCCCEECCCCCCEEEECCCEEEEEECCC
LPGKPLPDGTPGPSLYCAVIVKRVDAQTRAKTGINELLRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA