| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488271
Identifier: 103488271
GI number: 103488271
Start: 2959298
End: 2959828
Strand: Direct
Name: 103488271
Synonym: Sala_2794
Alternate gene names: NA
Gene position: 2959298-2959828 (Clockwise)
Preceding gene: 103488269
Following gene: 103488272
Centisome position: 88.46
GC content: 70.06
Gene sequence:
>531_bases ATGTTTTCCTTACGCAAATGGTTCCGATCCGATCCCGACCCGCGTGAGGCGCGCCGCCCGCTGTGGAATGCGGTGGTCGC CACCGCGCGCGCGCCGCACTGGTATGTCGAAGGCGGCGTTCCCGACACACTCGACGGCCGGTTCGACATGGTGAGCCTGG TGACGGCGCTGGTGCTGCACCGCATCGACGACGACCCCGAACAGGCGCTTGCCGGTGTCCAGCTCACCGAATTGTTCGTG AGCGACATGGACGGGCAGATGCGCCAGATCGGCTTTGGCGACATGGTCGTCGGCAAGCAGGTCGGGCGGATGATGGGGGC GCTCGGCGGACGTCTCGGCGCCTATCGCGCGCCCGACGGATCGGACGCGCTGCGCGCGGCGCTGATCCGCAACCTGTGGC GCGGCAAGGCGCCGGACGACGCGGCGCTGACGCATGTGATGGCCGCGGTAGCGGCGCTGCGCGGCGCGCTTGCCGCGATG CCGGTCGCCGAACTGGTCGCCACCGACCGCCTGCCCGGAGCGCAAGGTTGA
Upstream 100 bases:
>100_bases AAGCGGCGATCGCGCACAAGCCGCTTGTGCCGCGGCAAAGCTTGCCACAAGCTGACCGGCGCCCCTTTTCGCGCAGCGCG AATGCACCTAAGCAGCGGCG
Downstream 100 bases:
>100_bases GCGCCGCACCCGAGTTTTCGCTGGTCGTCACGCTCGCCGACGCAGCGCATGGCCGCGACATCGCGGTCGAGGCCGACGCT GGCGCGCGCGCGCGGATCGC
Product: CBP3 protein
Products: NA
Alternate protein names: CBP3 Protein; CBP3 Protein Mitochondrial
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MFSLRKWFRSDPDPREARRPLWNAVVATARAPHWYVEGGVPDTLDGRFDMVSLVTALVLHRIDDDPEQALAGVQLTELFV SDMDGQMRQIGFGDMVVGKQVGRMMGALGGRLGAYRAPDGSDALRAALIRNLWRGKAPDDAALTHVMAAVAALRGALAAM PVAELVATDRLPGAQG
Sequences:
>Translated_176_residues MFSLRKWFRSDPDPREARRPLWNAVVATARAPHWYVEGGVPDTLDGRFDMVSLVTALVLHRIDDDPEQALAGVQLTELFV SDMDGQMRQIGFGDMVVGKQVGRMMGALGGRLGAYRAPDGSDALRAALIRNLWRGKAPDDAALTHVMAAVAALRGALAAM PVAELVATDRLPGAQG >Mature_176_residues MFSLRKWFRSDPDPREARRPLWNAVVATARAPHWYVEGGVPDTLDGRFDMVSLVTALVLHRIDDDPEQALAGVQLTELFV SDMDGQMRQIGFGDMVVGKQVGRMMGALGGRLGAYRAPDGSDALRAALIRNLWRGKAPDDAALTHVMAAVAALRGALAAM PVAELVATDRLPGAQG
Specific function: Unknown
COG id: COG5452
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18976; Mature: 18976
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSLRKWFRSDPDPREARRPLWNAVVATARAPHWYVEGGVPDTLDGRFDMVSLVTALVLH CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH RIDDDPEQALAGVQLTELFVSDMDGQMRQIGFGDMVVGKQVGRMMGALGGRLGAYRAPDG HCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC SDALRAALIRNLWRGKAPDDAALTHVMAAVAALRGALAAMPVAELVATDRLPGAQG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFSLRKWFRSDPDPREARRPLWNAVVATARAPHWYVEGGVPDTLDGRFDMVSLVTALVLH CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH RIDDDPEQALAGVQLTELFVSDMDGQMRQIGFGDMVVGKQVGRMMGALGGRLGAYRAPDG HCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC SDALRAALIRNLWRGKAPDDAALTHVMAAVAALRGALAAMPVAELVATDRLPGAQG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA