| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488262
Identifier: 103488262
GI number: 103488262
Start: 2947108
End: 2947959
Strand: Direct
Name: 103488262
Synonym: Sala_2785
Alternate gene names: NA
Gene position: 2947108-2947959 (Clockwise)
Preceding gene: 103488261
Following gene: 103488263
Centisome position: 88.1
GC content: 67.61
Gene sequence:
>852_bases ATGACCCGTATATTGGCCTGTATCGATGCCTCGCTCTATGCAACGAGCGTGATCGACCATGCCGCCTGGGCCGCCCGGCG GCTGGCGGCGGAAATCGAAATCCTGCATGTCATCCAGCGCAAGGATGCCGTCGCCGCGCGGCGCGACCTGTCGGGCGCGG TCGGGCTTGGCGCCAAGTCGGCGCTGCTCGAAGAGCTTGTGCGGATCGACGAGAGCGAAAGCAGGCTGGCGCAGGAACAG GGCCGCACGCTGCTCGCGGCGGCGAAGGCGCATCTTGCCGAACAGGGCTTCGACCGCATCGAAACGACGCACCGCCACGG CGGGATCATCGAAACGATCGTCGAGCGCGAGGCGGACGCCGACATCGTCGTGATCGGCAAGCGCGGCGCGTCGGCCGACT TTGCCCGCGGCCATCTCGGCAGCAAGGTCGAGCGCGTCGTGCGCCAGAGCGAAAAGCCGGTGCTCGTCGCGTCGCGCGCC TTTTCGTCCCCCGATACGGTGACGATCGCCTTCGACGGCGGGCCGAGCGCGCGCAAGGCGCTCGTCTATGCCGCGACCTC GCCGCTGTTCGCCGACGCGGAACTGCATGTGGTGATGGCGGGCCGCGACGGTGCGGGCAACCAGTCGCACCTCAAATGGG CGCGCGAGATACTGGTCATGCACAAGGATGCGCGGGTCAGCCTGATCGACGGCAAGCCCGAGGAGGTGATCGCGCTCGAC ATCGAGGCGCGCGGGGCAAAGATGCTGGTCATGGGTGCCTATGGTCACGGCCCGCTGCGCACGATGCTCGTCGGTAGCAC GACGACCGAGATGATCCGGTCCTGCACCATCCCGGTGCTGCTGTTCCGCTGA
Upstream 100 bases:
>100_bases GGGCTCAACGAAGCCAGCGCGACGATGATCGACCGCTTCGGCATTTCGGACAAGCCCGACGCCGAAGCGCGCCTCGCCGC GCATTGAGGGAGAGAAGGAC
Downstream 100 bases:
>100_bases CCCCGCGATGCCGCTGTCGCCCGACACTGCCCGCGACCTTTTGCAAGCACGGCTCCGCGCGCTCGATGAGGAGGATGCAC TGAGCCGCGAGGCGACGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: USP Slr1230 [H]
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MTRILACIDASLYATSVIDHAAWAARRLAAEIEILHVIQRKDAVAARRDLSGAVGLGAKSALLEELVRIDESESRLAQEQ GRTLLAAAKAHLAEQGFDRIETTHRHGGIIETIVEREADADIVVIGKRGASADFARGHLGSKVERVVRQSEKPVLVASRA FSSPDTVTIAFDGGPSARKALVYAATSPLFADAELHVVMAGRDGAGNQSHLKWAREILVMHKDARVSLIDGKPEEVIALD IEARGAKMLVMGAYGHGPLRTMLVGSTTTEMIRSCTIPVLLFR
Sequences:
>Translated_283_residues MTRILACIDASLYATSVIDHAAWAARRLAAEIEILHVIQRKDAVAARRDLSGAVGLGAKSALLEELVRIDESESRLAQEQ GRTLLAAAKAHLAEQGFDRIETTHRHGGIIETIVEREADADIVVIGKRGASADFARGHLGSKVERVVRQSEKPVLVASRA FSSPDTVTIAFDGGPSARKALVYAATSPLFADAELHVVMAGRDGAGNQSHLKWAREILVMHKDARVSLIDGKPEEVIALD IEARGAKMLVMGAYGHGPLRTMLVGSTTTEMIRSCTIPVLLFR >Mature_282_residues TRILACIDASLYATSVIDHAAWAARRLAAEIEILHVIQRKDAVAARRDLSGAVGLGAKSALLEELVRIDESESRLAQEQG RTLLAAAKAHLAEQGFDRIETTHRHGGIIETIVEREADADIVVIGKRGASADFARGHLGSKVERVVRQSEKPVLVASRAF SSPDTVTIAFDGGPSARKALVYAATSPLFADAELHVVMAGRDGAGNQSHLKWAREILVMHKDARVSLIDGKPEEVIALDI EARGAKMLVMGAYGHGPLRTMLVGSTTTEMIRSCTIPVLLFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 30453; Mature: 30322
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRILACIDASLYATSVIDHAAWAARRLAAEIEILHVIQRKDAVAARRDLSGAVGLGAKS CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH ALLEELVRIDESESRLAQEQGRTLLAAAKAHLAEQGFDRIETTHRHGGIIETIVEREADA HHHHHHHHCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC DIVVIGKRGASADFARGHLGSKVERVVRQSEKPVLVASRAFSSPDTVTIAFDGGPSARKA CEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCHHEE LVYAATSPLFADAELHVVMAGRDGAGNQSHLKWAREILVMHKDARVSLIDGKPEEVIALD EEEEECCCEEECCEEEEEEECCCCCCCHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEE IEARGAKMLVMGAYGHGPLRTMLVGSTTTEMIRSCTIPVLLFR EECCCCEEEEEECCCCCCEEEEEECCHHHHHHHHCCCEEEEEC >Mature Secondary Structure TRILACIDASLYATSVIDHAAWAARRLAAEIEILHVIQRKDAVAARRDLSGAVGLGAKS CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH ALLEELVRIDESESRLAQEQGRTLLAAAKAHLAEQGFDRIETTHRHGGIIETIVEREADA HHHHHHHHCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC DIVVIGKRGASADFARGHLGSKVERVVRQSEKPVLVASRAFSSPDTVTIAFDGGPSARKA CEEEEECCCCCCCHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCHHEE LVYAATSPLFADAELHVVMAGRDGAGNQSHLKWAREILVMHKDARVSLIDGKPEEVIALD EEEEECCCEEECCEEEEEEECCCCCCCHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEE IEARGAKMLVMGAYGHGPLRTMLVGSTTTEMIRSCTIPVLLFR EECCCCEEEEEECCCCCCEEEEEECCHHHHHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]