Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488263

Identifier: 103488263

GI number: 103488263

Start: 2947967

End: 2948305

Strand: Direct

Name: 103488263

Synonym: Sala_2786

Alternate gene names: NA

Gene position: 2947967-2948305 (Clockwise)

Preceding gene: 103488262

Following gene: 103488265

Centisome position: 88.13

GC content: 69.62

Gene sequence:

>339_bases
ATGCCGCTGTCGCCCGACACTGCCCGCGACCTTTTGCAAGCACGGCTCCGCGCGCTCGATGAGGAGGATGCACTGAGCCG
CGAGGCGACGGCGCCGGTAAAACTGGAGCAAGACAGCGTCGGGCGCCTGTCGCGCATCGACGCGATGCAGATGCAGGCGA
TGGCGCTTGCGCAGCAGCAACGGCGCGTCCGTCAGCGACGCCAGATCGAGGCCGCGCTCGCGCGGATCGGGACGGGCGAG
TTCGGCTATTGCCTGGCCTGCGGCGAGGCGATTGCCGAGGCACGGCTGCGAAACAACCCGGCGGTCGCGACCTGCATCGC
CTGCGCTGCCGGAACCTGA

Upstream 100 bases:

>100_bases
TATGGTCACGGCCCGCTGCGCACGATGCTCGTCGGTAGCACGACGACCGAGATGATCCGGTCCTGCACCATCCCGGTGCT
GCTGTTCCGCTGACCCCGCG

Downstream 100 bases:

>100_bases
CTTCTCCGGCGCCTAAGCCGCCACCACTTCCTCGCTCTGACTGGTTGCCGCTTCCAGCAGGCGTTTCTCCAATGTCTTGA
CCCGCGCCGGGCTGTCGATC

Product: TraR/DksA family transcriptional regulator

Products: NA

Alternate protein names: TraR/DksA Family Transcriptional Regulator

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MPLSPDTARDLLQARLRALDEEDALSREATAPVKLEQDSVGRLSRIDAMQMQAMALAQQQRRVRQRRQIEAALARIGTGE
FGYCLACGEAIAEARLRNNPAVATCIACAAGT

Sequences:

>Translated_112_residues
MPLSPDTARDLLQARLRALDEEDALSREATAPVKLEQDSVGRLSRIDAMQMQAMALAQQQRRVRQRRQIEAALARIGTGE
FGYCLACGEAIAEARLRNNPAVATCIACAAGT
>Mature_111_residues
PLSPDTARDLLQARLRALDEEDALSREATAPVKLEQDSVGRLSRIDAMQMQAMALAQQQRRVRQRRQIEAALARIGTGEF
GYCLACGEAIAEARLRNNPAVATCIACAAGT

Specific function: Unknown

COG id: COG1734

COG function: function code T; DnaK suppressor protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12154; Mature: 12023

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS51128 ZF_DKSA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSPDTARDLLQARLRALDEEDALSREATAPVKLEQDSVGRLSRIDAMQMQAMALAQQQ
CCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RRVRQRRQIEAALARIGTGEFGYCLACGEAIAEARLRNNPAVATCIACAAGT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PLSPDTARDLLQARLRALDEEDALSREATAPVKLEQDSVGRLSRIDAMQMQAMALAQQQ
CCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RRVRQRRQIEAALARIGTGEFGYCLACGEAIAEARLRNNPAVATCIACAAGT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA