Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488241

Identifier: 103488241

GI number: 103488241

Start: 2913020

End: 2913925

Strand: Direct

Name: 103488241

Synonym: Sala_2764

Alternate gene names: NA

Gene position: 2913020-2913925 (Clockwise)

Preceding gene: 103488240

Following gene: 103488242

Centisome position: 87.08

GC content: 68.21

Gene sequence:

>906_bases
TTGACCCGACTCGCCCTTCATGCCGTCCTTGTCGCCACGCTTGCCATGTCCGGATGTTCGTCCGGCCCGCGCTTTCAGGC
GGCGCTGCCGCAGGTTCGGGATGTTCCGGTCGTCGCAAATCTCGCGCCGCACGAGGCACTGGCGCGCGGGCGCAGCTTTC
TGGGGGCCCGTCAATATGGGCTGGCGATCGAATTGTTCCGAAACGCCGGTCGCGATCCTGCGCTGCGAACCGACAGCCTC
AACGGACTCGCCGTCGCTTATGACGCGATCGGGCGCCGCGACATCGCCGAACGCTATTTCGAAGAAGCGCTCGCGTCGCA
GCCCGACGACGCGCGCACGCGGCGCAACCTTGCCCGCTTTTATGCGGCCACGGGCCAGATGGACAAGCAGCGGGCCATTC
TCTCCGCAACGGTCGCCATTGCCGCGCCCGCTGGGTCGGCATCGAAAGGGAATGAAGGGATGGCGGAGATCGTCCATGAC
ACTGCGACGCCGCGCGCAATGGCGATCGGGCAGCAAACGCCGCTTTCGGCCTTTCTGCCGCCGATGATCGTCAGGGCGGC
CCTGCCGCCGCAAGGGGCATCCGCCTCCCCTGCCACCACGACGAACGGCCGGACGGGTGACGTCGTCGAATGCCTGCTCG
ACCGCCCCGTCGGCGCGGCAGCCGTATCCGCCGAAATGCGGATGTTCCGGTTGAACATCGGCGAAGTGTTCATCGCGGCC
GAGCCTCCCGGCACCCTGTGCCGCAACGCGCCGACGGGCGCCGACGGGCAGCCCGAATCCGGCACGAGCAATGGCGAATA
TCTGGGCCGGGTTGCGGCCTATCTCGACCGGCTGAACCGGCAGGCCGCGGCCGAGGAGTTCGCGGCGTTGTGGCGGGCGA
CTTTCTGGTCGTACCGCGGGGCCTGA

Upstream 100 bases:

>100_bases
GTGGCCTGCATGTTGCCGGTGATGATCGGCGTGCTGATGTTGCCTGCCGTCATTCGCGTGATCCGCGACATCGCGCCCGC
GCTTGCAGGAGGAGGATGAA

Downstream 100 bases:

>100_bases
GGCGCACGGACATGCCTTGTCGGCCAGCCACCTGCCTCGCGGCCTTGCTTGTGTCCGCCGCGCAGGCGACCGGCGCAGGC
GCCGCGCCCCCGCCGCCGGT

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSL
NGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHD
TATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA
EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA

Sequences:

>Translated_301_residues
MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSL
NGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHD
TATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA
EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA
>Mature_300_residues
TRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSLN
GLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDT
ATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAAE
PPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31823; Mature: 31692

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYG
CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
LAIELFRNAGRDPALRTDSLNGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARF
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDTATPRAMAIGQQTPLSAFLP
HHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH
PMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCEEEEEE
EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRG
CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
A
C
>Mature Secondary Structure 
TRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYG
CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
LAIELFRNAGRDPALRTDSLNGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARF
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDTATPRAMAIGQQTPLSAFLP
HHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH
PMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCEEEEEE
EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRG
CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA