| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488241
Identifier: 103488241
GI number: 103488241
Start: 2913020
End: 2913925
Strand: Direct
Name: 103488241
Synonym: Sala_2764
Alternate gene names: NA
Gene position: 2913020-2913925 (Clockwise)
Preceding gene: 103488240
Following gene: 103488242
Centisome position: 87.08
GC content: 68.21
Gene sequence:
>906_bases TTGACCCGACTCGCCCTTCATGCCGTCCTTGTCGCCACGCTTGCCATGTCCGGATGTTCGTCCGGCCCGCGCTTTCAGGC GGCGCTGCCGCAGGTTCGGGATGTTCCGGTCGTCGCAAATCTCGCGCCGCACGAGGCACTGGCGCGCGGGCGCAGCTTTC TGGGGGCCCGTCAATATGGGCTGGCGATCGAATTGTTCCGAAACGCCGGTCGCGATCCTGCGCTGCGAACCGACAGCCTC AACGGACTCGCCGTCGCTTATGACGCGATCGGGCGCCGCGACATCGCCGAACGCTATTTCGAAGAAGCGCTCGCGTCGCA GCCCGACGACGCGCGCACGCGGCGCAACCTTGCCCGCTTTTATGCGGCCACGGGCCAGATGGACAAGCAGCGGGCCATTC TCTCCGCAACGGTCGCCATTGCCGCGCCCGCTGGGTCGGCATCGAAAGGGAATGAAGGGATGGCGGAGATCGTCCATGAC ACTGCGACGCCGCGCGCAATGGCGATCGGGCAGCAAACGCCGCTTTCGGCCTTTCTGCCGCCGATGATCGTCAGGGCGGC CCTGCCGCCGCAAGGGGCATCCGCCTCCCCTGCCACCACGACGAACGGCCGGACGGGTGACGTCGTCGAATGCCTGCTCG ACCGCCCCGTCGGCGCGGCAGCCGTATCCGCCGAAATGCGGATGTTCCGGTTGAACATCGGCGAAGTGTTCATCGCGGCC GAGCCTCCCGGCACCCTGTGCCGCAACGCGCCGACGGGCGCCGACGGGCAGCCCGAATCCGGCACGAGCAATGGCGAATA TCTGGGCCGGGTTGCGGCCTATCTCGACCGGCTGAACCGGCAGGCCGCGGCCGAGGAGTTCGCGGCGTTGTGGCGGGCGA CTTTCTGGTCGTACCGCGGGGCCTGA
Upstream 100 bases:
>100_bases GTGGCCTGCATGTTGCCGGTGATGATCGGCGTGCTGATGTTGCCTGCCGTCATTCGCGTGATCCGCGACATCGCGCCCGC GCTTGCAGGAGGAGGATGAA
Downstream 100 bases:
>100_bases GGCGCACGGACATGCCTTGTCGGCCAGCCACCTGCCTCGCGGCCTTGCTTGTGTCCGCCGCGCAGGCGACCGGCGCAGGC GCCGCGCCCCCGCCGCCGGT
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSL NGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHD TATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA
Sequences:
>Translated_301_residues MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSL NGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHD TATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA >Mature_300_residues TRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYGLAIELFRNAGRDPALRTDSLN GLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARFYAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDT ATPRAMAIGQQTPLSAFLPPMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAAE PPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31823; Mature: 31692
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYG CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH LAIELFRNAGRDPALRTDSLNGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARF HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH YAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDTATPRAMAIGQQTPLSAFLP HHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH PMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCEEEEEE EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRG CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC A C >Mature Secondary Structure TRLALHAVLVATLAMSGCSSGPRFQAALPQVRDVPVVANLAPHEALARGRSFLGARQYG CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH LAIELFRNAGRDPALRTDSLNGLAVAYDAIGRRDIAERYFEEALASQPDDARTRRNLARF HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH YAATGQMDKQRAILSATVAIAAPAGSASKGNEGMAEIVHDTATPRAMAIGQQTPLSAFLP HHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH PMIVRAALPPQGASASPATTTNGRTGDVVECLLDRPVGAAAVSAEMRMFRLNIGEVFIAA HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCEEEEEE EPPGTLCRNAPTGADGQPESGTSNGEYLGRVAAYLDRLNRQAAAEEFAALWRATFWSYRG CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA