Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488242

Identifier: 103488242

GI number: 103488242

Start: 2913937

End: 2914812

Strand: Direct

Name: 103488242

Synonym: Sala_2765

Alternate gene names: NA

Gene position: 2913937-2914812 (Clockwise)

Preceding gene: 103488241

Following gene: 103488243

Centisome position: 87.11

GC content: 68.72

Gene sequence:

>876_bases
ATGCCTTGTCGGCCAGCCACCTGCCTCGCGGCCTTGCTTGTGTCCGCCGCGCAGGCGACCGGCGCAGGCGCCGCGCCCCC
GCCGCCGGTCGAGCAGGCGTCCGCCAATCCGGACCCATCGAACGGAGTCGCCGCCGCCGACCCGCTGATCCTTGCCGATG
ATGCCCTGCAGGGTCGCCGTCTTTTCGAAGCCCAGATGTATCTCGACCGGCTTGCCGCGGATCCACGTCCCGAAGCGCTG
TTGCTGCGGGCCGAACTCGCGCTTTTGCGGGGTCGACCGCACGAAGCGCTCGCCCTGCTCGCGCGTCCCGGCGCCGATTC
GACGCCGGTTTGCCGGACAGGCGCGGCCGCTGCGATGGCGCTGCTGCAGGTCGGGCGGGCCGAGCAGGCCTCCGCGCGAT
CCGAAGCGCTCGACAGCCGCTGTTCGGCCGACCCGTTCCACTGGCGCACGCGAGGCCGGATTTCCTATGCGAGGCGCGAC
ATTCCCGGAGCACTTGCCGCCTTTCGGCAGGCTCTGGCGCTCCAGCCATCGGATCCGGGCATCGAAAACGACCTAGCCGT
ATCGCTTATCGCCGCAGGCGATGCCGAACAGGCCGCAGGAATGCTGACCGAATTGCTGCGCCAGGCGCCGGAGGCCAGCG
ATGTCTCCCTGAATCTGGATTTCGCCAATGCGATGCGCGGAATCGAACCGGTGCGCAGGCCACAGGACGACGACCAGATG
TGGAGCATCCGGCTGGAGATGGCGGGTCAAGGCGCGCGGCAGGCCCGTCGGATAAAACTGGCGGAATCGCTGCTGGCCAG
GGCGCTGCTCAATCGGCCGCGTCACGACGACGCGTTGTGGCAGCAATATGCCGAGGTCGCCGGACGCGATGATTGA

Upstream 100 bases:

>100_bases
CCTATCTCGACCGGCTGAACCGGCAGGCCGCGGCCGAGGAGTTCGCGGCGTTGTGGCGGGCGACTTTCTGGTCGTACCGC
GGGGCCTGAGGCGCACGGAC

Downstream 100 bases:

>100_bases
CATCATCGCCCTTTGCCAGCTGCTCTTCGTGCTGCTGCTGCTCGTCGCGGCGGCATCCGATCTGCGCTATCGGCGCATTC
CGAACCTGATCCCGGCGCTC

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEAL
LLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRD
IPGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM
WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD

Sequences:

>Translated_291_residues
MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEAL
LLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRD
IPGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM
WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD
>Mature_290_residues
PCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEALL
LRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDI
PGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQMW
SIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31023; Mature: 30892

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRR
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH
LFEAQMYLDRLAADPRPEALLLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCHHHHHHHHHH
LLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDIPGALAAFRQALALQPSDPG
HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC
IENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM
CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCHHHCCCCCCCE
WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD
EEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRR
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH
LFEAQMYLDRLAADPRPEALLLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCHHHHHHHHHH
LLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDIPGALAAFRQALALQPSDPG
HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC
IENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM
CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCHHHCCCCCCCE
WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD
EEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA