| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488235
Identifier: 103488235
GI number: 103488235
Start: 2907047
End: 2908087
Strand: Direct
Name: 103488235
Synonym: Sala_2758
Alternate gene names: NA
Gene position: 2907047-2908087 (Clockwise)
Preceding gene: 103488233
Following gene: 103488238
Centisome position: 86.9
GC content: 68.3
Gene sequence:
>1041_bases ATGCGTCGTCATGCCCCATCCGCCCGCGCCGCGCGGTCCCTGCTGCCGCTGATCGCGGCCACCCTGGCGGTCGCGCCCGC AGCAGCGCAGGCGTCGACCAAGCTGGACAATGTCAAGGCGGCGGCACCGGCCAAGGTCGTCTGTGACGCGGTGGCCGCTT CCGCCGTGCCGCGCGCCCGCGACCTGTCGCAGCTGATCCTGGACGGCGCGCCGAGCGCGCTCGATCGCATCAGGATGCAG CAGCAAGGGATAAATCGGCCCGCAACGGTCAACACCATCCCCGATCGTCGCGCGCTCGAACCCGCAAGCCGTATGCCGCT TTCCTTCACGGCGTCGGCACCCGTCGACTGCCGCAATGCGCCGTCGCCGCCGGGCGTGACGGCCGAATGGGATGCCGGGT CCGAACTCGGCACGCGCGCCATTCCGGTCAAGCGGACGCGCTTCGACGATCGCTGGGACCGCGTGCACCGCGCCGCGCCC GCCGCGCTGATGCAGCGCCAGCTGCAGAGCGCCAATGCCCTGTCCGGGCTCAGCGAAACCGAGCTGCTGGCGCGCGTCAA TCAATGGGTCAATCGCGAAATCGCCTATGTCGGGGACGATCGCAATTACCGCCGCCGTGATTTCTGGGCGACCGCTGACG AGACGCTCGCGCGCGGCAGCGGTGATTGCGAGGATTTTGCGATCCTGAAAATGCAGATGCTGCGCGCCGCCGGGATCGAT GCCAACCGGATGAAGCTCGTTCTGCTGCGCGATCTCGCCGCCAACGCCGATCACGCCTTCCTGCTCGTCGATACGGGTGG CGGCAAGCTGGTGCTCGATAATGTGACCGACCGCCTCTATGACGGCGCCCGACCGCAAGCGGTGCGCCCCGTGCTGTCGT TCAGCGCCGACCGGCGGTGGGTCCACGCCTATCGCACCGCGGCGGAAACCCCGGCTGCAACCATCGTTCCGGGGGCGCGC AAGAGCATCACCCTTGCGCTCGCCGATCAGCGTTCGGTCAAGGCCGTCCCGCTGACCTTCAAAACGGGTTTGAGCAAATA G
Upstream 100 bases:
>100_bases AGCTGGCGCCCGCGGCCCCGTGTTCGGGCAATGATGGTGAAGACGATGTTCACCATCGCCATGAAGCTTATCCTCATCCG GCTACGGCAAATGGGACGGC
Downstream 100 bases:
>100_bases CTGAGCACCGATTTCTTGCCCGTCAGGATTTCGACATCGCATAGCATCCCAGGAGTGATCGGCAGGCGTCGGCCGTTCGA TACGAGAAAGCTGTTCGTCG
Product: periplasmic protein-like protein
Products: NA
Alternate protein names: Transglutaminase Family Protein Cysteine Peptidase BTLCP; Periplasmic Protein-Like Protein; Sulfate Adenylyltransferase Small Subunit; Transglutaminase Domain Protein; Sulfate Adenylyltransferase
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MRRHAPSARAARSLLPLIAATLAVAPAAAQASTKLDNVKAAAPAKVVCDAVAASAVPRARDLSQLILDGAPSALDRIRMQ QQGINRPATVNTIPDRRALEPASRMPLSFTASAPVDCRNAPSPPGVTAEWDAGSELGTRAIPVKRTRFDDRWDRVHRAAP AALMQRQLQSANALSGLSETELLARVNQWVNREIAYVGDDRNYRRRDFWATADETLARGSGDCEDFAILKMQMLRAAGID ANRMKLVLLRDLAANADHAFLLVDTGGGKLVLDNVTDRLYDGARPQAVRPVLSFSADRRWVHAYRTAAETPAATIVPGAR KSITLALADQRSVKAVPLTFKTGLSK
Sequences:
>Translated_346_residues MRRHAPSARAARSLLPLIAATLAVAPAAAQASTKLDNVKAAAPAKVVCDAVAASAVPRARDLSQLILDGAPSALDRIRMQ QQGINRPATVNTIPDRRALEPASRMPLSFTASAPVDCRNAPSPPGVTAEWDAGSELGTRAIPVKRTRFDDRWDRVHRAAP AALMQRQLQSANALSGLSETELLARVNQWVNREIAYVGDDRNYRRRDFWATADETLARGSGDCEDFAILKMQMLRAAGID ANRMKLVLLRDLAANADHAFLLVDTGGGKLVLDNVTDRLYDGARPQAVRPVLSFSADRRWVHAYRTAAETPAATIVPGAR KSITLALADQRSVKAVPLTFKTGLSK >Mature_346_residues MRRHAPSARAARSLLPLIAATLAVAPAAAQASTKLDNVKAAAPAKVVCDAVAASAVPRARDLSQLILDGAPSALDRIRMQ QQGINRPATVNTIPDRRALEPASRMPLSFTASAPVDCRNAPSPPGVTAEWDAGSELGTRAIPVKRTRFDDRWDRVHRAAP AALMQRQLQSANALSGLSETELLARVNQWVNREIAYVGDDRNYRRRDFWATADETLARGSGDCEDFAILKMQMLRAAGID ANRMKLVLLRDLAANADHAFLLVDTGGGKLVLDNVTDRLYDGARPQAVRPVLSFSADRRWVHAYRTAAETPAATIVPGAR KSITLALADQRSVKAVPLTFKTGLSK
Specific function: Unknown
COG id: COG3672
COG function: function code S; Predicted periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37378; Mature: 37378
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRHAPSARAARSLLPLIAATLAVAPAAAQASTKLDNVKAAAPAKVVCDAVAASAVPRAR CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH DLSQLILDGAPSALDRIRMQQQGINRPATVNTIPDRRALEPASRMPLSFTASAPVDCRNA HHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHCCHHHCCCEEEECCCCCCCCCC PSPPGVTAEWDAGSELGTRAIPVKRTRFDDRWDRVHRAAPAALMQRQLQSANALSGLSET CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ELLARVNQWVNREIAYVGDDRNYRRRDFWATADETLARGSGDCEDFAILKMQMLRAAGID HHHHHHHHHHCCEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCC ANRMKLVLLRDLAANADHAFLLVDTGGGKLVLDNVTDRLYDGARPQAVRPVLSFSADRRW CCCEEEEEEHHHHCCCCCEEEEEECCCCEEEECCHHHHHHCCCCCHHHHHHHHHCCCHHH VHAYRTAAETPAATIVPGARKSITLALADQRSVKAVPLTFKTGLSK HHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCEEEEEEHHCCCCC >Mature Secondary Structure MRRHAPSARAARSLLPLIAATLAVAPAAAQASTKLDNVKAAAPAKVVCDAVAASAVPRAR CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH DLSQLILDGAPSALDRIRMQQQGINRPATVNTIPDRRALEPASRMPLSFTASAPVDCRNA HHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHCCHHHCCCEEEECCCCCCCCCC PSPPGVTAEWDAGSELGTRAIPVKRTRFDDRWDRVHRAAPAALMQRQLQSANALSGLSET CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ELLARVNQWVNREIAYVGDDRNYRRRDFWATADETLARGSGDCEDFAILKMQMLRAAGID HHHHHHHHHHCCEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCC ANRMKLVLLRDLAANADHAFLLVDTGGGKLVLDNVTDRLYDGARPQAVRPVLSFSADRRW CCCEEEEEEHHHHCCCCCEEEEEECCCCEEEECCHHHHHHCCCCCHHHHHHHHHCCCHHH VHAYRTAAETPAATIVPGARKSITLALADQRSVKAVPLTFKTGLSK HHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCEEEEEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA