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The map label for this gene is ybbN [H]

Identifier: 103488142

GI number: 103488142

Start: 2809881

End: 2810792

Strand: Direct

Name: ybbN [H]

Synonym: Sala_2665

Alternate gene names: 103488142

Gene position: 2809881-2810792 (Clockwise)

Preceding gene: 103488139

Following gene: 103488143

Centisome position: 84.0

GC content: 67.76

Gene sequence:

>912_bases
GTGGCCACTCTCGGTCTGAATCCGCAGGACAAGGAAGCCGTCGAAGCCTTCCGCCGCGATGTCGTCGAGCCATCGATGAC
CAGCCTCGTCATCCTCGATTTCTGGGCCGAATGGTGCGGGCCGTGCAAGCAGCTTGCCCCGGTGCTCGAAAAGGTCGCCG
CCGACTATGCCGACAGGGGCGTGGTGCTGGCGAAGGTCGATGTCGATGCGAATCGGTTCATCGCCAGCCAGTTCCAGGTC
CAGTCGATCCCGACCGTCTATGCGATTTTCCAGGGCCAGCCGGTCGCGAACCTGACCAATGCGCGCAGCGAAAGCCAGCT
TAAAGCGATGCTTGACCAGCTGCTCGCACAGCTGCCGATCGAAAGCGCCACCAAGGATCGCGCGGTCGAGATCGCACCGC
TCCTCGAGATGGGAGAGAATGTGCTCGCCGAGGGCGACGGCGCGCGCGCTACGAGCATCTTTGGCCAGATCGCCGAAATC
GCGCCCGACAATGCCGCGGCGCACGGCGGCCTGATCCGCGCGATGCTGCTCGCGGGCGACGTCGCGGGCGCGCAGGCGGT
GCTCGACGCGCTGCCGGCCGAAATGGCGGACGACCCGGCGATCGCGCAGGCAAAAAGCGCGCTCGCCCTGGCCGCCGATG
CCCCCGATTCGGGCGAGCTTGCGGCGCTCGAAGCCGCGGTCGCCGCAAATCCCGACGACCATCAGGCGCGGTTCGACCTT
GCCGCGGCGCAGATCGGCGTGGGGCAGCGCGATGCCGCCGCCGACAATCTGCTTCACATCATCGCCGCCGACCGCGATTG
GCAGGAGGGCGGGGCGCGCGCCAAATTGCTCGCGCTGTTCGAGGCCGTCGGGCTGGAGGACGCCTGGGTTTCGGCGCAGC
GTCGTCGCCTGTCGCTGATCCTGTTCGGGTGA

Upstream 100 bases:

>100_bases
CGAAGGGTTGGCATATCGCCTGCAAATCCCACATAAGCGGAACATGAGTCCTTTTCGTCCGCGCGAAAAGGGCGCCAATC
GAAACAGGAGCACCCCCTTT

Downstream 100 bases:

>100_bases
TGAGCGCTACCGCGCCCCTCACGATTCAGCGGATCGCCATCTTTCCGCTCACCGGCGCGGTGCTGTTTCCGGGGCTGCAC
CTGCCGCTCCATATCTTCGA

Product: thioredoxin-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MATLGLNPQDKEAVEAFRRDVVEPSMTSLVILDFWAEWCGPCKQLAPVLEKVAADYADRGVVLAKVDVDANRFIASQFQV
QSIPTVYAIFQGQPVANLTNARSESQLKAMLDQLLAQLPIESATKDRAVEIAPLLEMGENVLAEGDGARATSIFGQIAEI
APDNAAAHGGLIRAMLLAGDVAGAQAVLDALPAEMADDPAIAQAKSALALAADAPDSGELAALEAAVAANPDDHQARFDL
AAAQIGVGQRDAAADNLLHIIAADRDWQEGGARAKLLALFEAVGLEDAWVSAQRRRLSLILFG

Sequences:

>Translated_303_residues
MATLGLNPQDKEAVEAFRRDVVEPSMTSLVILDFWAEWCGPCKQLAPVLEKVAADYADRGVVLAKVDVDANRFIASQFQV
QSIPTVYAIFQGQPVANLTNARSESQLKAMLDQLLAQLPIESATKDRAVEIAPLLEMGENVLAEGDGARATSIFGQIAEI
APDNAAAHGGLIRAMLLAGDVAGAQAVLDALPAEMADDPAIAQAKSALALAADAPDSGELAALEAAVAANPDDHQARFDL
AAAQIGVGQRDAAADNLLHIIAADRDWQEGGARAKLLALFEAVGLEDAWVSAQRRRLSLILFG
>Mature_302_residues
ATLGLNPQDKEAVEAFRRDVVEPSMTSLVILDFWAEWCGPCKQLAPVLEKVAADYADRGVVLAKVDVDANRFIASQFQVQ
SIPTVYAIFQGQPVANLTNARSESQLKAMLDQLLAQLPIESATKDRAVEIAPLLEMGENVLAEGDGARATSIFGQIAEIA
PDNAAAHGGLIRAMLLAGDVAGAQAVLDALPAEMADDPAIAQAKSALALAADAPDSGELAALEAAVAANPDDHQARFDLA
AAQIGVGQRDAAADNLLHIIAADRDWQEGGARAKLLALFEAVGLEDAWVSAQRRRLSLILFG

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=87, Percent_Identity=42.5287356321839, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI87081747, Length=289, Percent_Identity=29.757785467128, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=37.2549019607843, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=38.3720930232558, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI212646193, Length=107, Percent_Identity=34.5794392523364, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71998175, Length=98, Percent_Identity=37.7551020408163, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71980565, Length=90, Percent_Identity=32.2222222222222, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71980562, Length=110, Percent_Identity=30, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321648, Length=74, Percent_Identity=40.5405405405405, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639826, Length=83, Percent_Identity=43.3734939759036, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17530795, Length=88, Percent_Identity=35.2272727272727, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17648013, Length=85, Percent_Identity=42.3529411764706, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24583090, Length=85, Percent_Identity=42.3529411764706, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31894; Mature: 31763

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLGLNPQDKEAVEAFRRDVVEPSMTSLVILDFWAEWCGPCKQLAPVLEKVAADYADRG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
VVLAKVDVDANRFIASQFQVQSIPTVYAIFQGQPVANLTNARSESQLKAMLDQLLAQLPI
EEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
ESATKDRAVEIAPLLEMGENVLAEGDGARATSIFGQIAEIAPDNAAAHGGLIRAMLLAGD
CCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
VAGAQAVLDALPAEMADDPAIAQAKSALALAADAPDSGELAALEAAVAANPDDHQARFDL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHH
AAAQIGVGQRDAAADNLLHIIAADRDWQEGGARAKLLALFEAVGLEDAWVSAQRRRLSLI
HHHHHCCCCCHHHHHHEEEEEECCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCEEEEE
LFG
EEC
>Mature Secondary Structure 
ATLGLNPQDKEAVEAFRRDVVEPSMTSLVILDFWAEWCGPCKQLAPVLEKVAADYADRG
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
VVLAKVDVDANRFIASQFQVQSIPTVYAIFQGQPVANLTNARSESQLKAMLDQLLAQLPI
EEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
ESATKDRAVEIAPLLEMGENVLAEGDGARATSIFGQIAEIAPDNAAAHGGLIRAMLLAGD
CCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
VAGAQAVLDALPAEMADDPAIAQAKSALALAADAPDSGELAALEAAVAANPDDHQARFDL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHH
AAAQIGVGQRDAAADNLLHIIAADRDWQEGGARAKLLALFEAVGLEDAWVSAQRRRLSLI
HHHHHCCCCCHHHHHHEEEEEECCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHCEEEEE
LFG
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]