Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488139

Identifier: 103488139

GI number: 103488139

Start: 2807655

End: 2807969

Strand: Direct

Name: 103488139

Synonym: Sala_2662

Alternate gene names: NA

Gene position: 2807655-2807969 (Clockwise)

Preceding gene: 103488138

Following gene: 103488142

Centisome position: 83.93

GC content: 58.41

Gene sequence:

>315_bases
ATGACAGCATTCCGTGTTTCGGCAATCGCGAGCCGGCGGCTCGACGAGATTTTTGTCTATTCGCTCGACACATGGGGCCA
GGAGCAGGCCGAAACCTATATCCGTGAGTTGTTTGCCTGCTTCGACCGGATCGCGCGCCGCGAATTGCTCTGGCGCGCGA
TACCGGCCGAATTCAGCGTCGATGGTTATTATTGCCGCCACGAACATCACTACGTCTATTGGCGGCTGCTCGCCGATGGC
GATGTCGGGATCGTCACTATCCTGCACGAGCGCATGCACCAGATGGACCGTTTCCGCGAGGATGATGGCGCTTGA

Upstream 100 bases:

>100_bases
CGCCTGAAAGCGGAACTGACGCGCGCCTTCGCTGCCCCCGAAGACAGCTATGACGCATTGGATGCCGAGGCCGTGATCGC
CCGCAATCGCCGGGCGTGAC

Downstream 100 bases:

>100_bases
GATCGCTCGCCGGCGATCGGCGTTATGGTGACAGCGTGCTCGCGCCCGGCGCCGATCCCCGGTGGAGGATGTGTTCACCC
TCGACCAGCGATCCGGCGCG

Product: plasmid stabilization system protein

Products: NA

Alternate protein names: Plasmid Stabilization System

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MTAFRVSAIASRRLDEIFVYSLDTWGQEQAETYIRELFACFDRIARRELLWRAIPAEFSVDGYYCRHEHHYVYWRLLADG
DVGIVTILHERMHQMDRFREDDGA

Sequences:

>Translated_104_residues
MTAFRVSAIASRRLDEIFVYSLDTWGQEQAETYIRELFACFDRIARRELLWRAIPAEFSVDGYYCRHEHHYVYWRLLADG
DVGIVTILHERMHQMDRFREDDGA
>Mature_103_residues
TAFRVSAIASRRLDEIFVYSLDTWGQEQAETYIRELFACFDRIARRELLWRAIPAEFSVDGYYCRHEHHYVYWRLLADGD
VGIVTILHERMHQMDRFREDDGA

Specific function: Unknown

COG id: COG3668

COG function: function code R; Plasmid stabilization system protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12475; Mature: 12344

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFRVSAIASRRLDEIFVYSLDTWGQEQAETYIRELFACFDRIARRELLWRAIPAEFSV
CCCHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGYYCRHEHHYVYWRLLADGDVGIVTILHERMHQMDRFREDDGA
CCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAFRVSAIASRRLDEIFVYSLDTWGQEQAETYIRELFACFDRIARRELLWRAIPAEFSV
CCHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGYYCRHEHHYVYWRLLADGDVGIVTILHERMHQMDRFREDDGA
CCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA