| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488094
Identifier: 103488094
GI number: 103488094
Start: 2756756
End: 2757862
Strand: Direct
Name: 103488094
Synonym: Sala_2616
Alternate gene names: NA
Gene position: 2756756-2757862 (Clockwise)
Preceding gene: 103488079
Following gene: 103488105
Centisome position: 82.41
GC content: 65.13
Gene sequence:
>1107_bases ATGGTCTATATCCACGAACTGCCGGACTGGCCGAACCTGCGCTGGAGCGACCAGCAGCTTGCCCAGCCGCTCGCCGCCGT GCGCCACCGACAGGGACGGTTGATCGGGCACATGGAGGCGCTTGGCTTCCCGCTGCGCGAGGAAGCCGTGCTTCAAGCAC TCACCGAGGACGTTATCAAATCCAGCGAGATCGAGGGCGAGGTGCTGGACAGGGAGCAGGTGCGCTCCTCCATCGCCCGC CGTCTCGGCATGGACATCGGCGGTTTGGTGGAAGCGGATCGCAACGTCGAGGGCGTTGTCGAAATGATGCTCGACGCCAC GCAGAACTATGCGCAGCCCCTGACCGCCGAACGGCTGTTCGGCTGGCACGCGGCGCTGTTCCCCACCGGACGCAGCGGCA TGAGCCGTATCACCGTGGGCGCATGGCGCACCGCCGAAGCTGGCCCGATGCAGGTTGTCTCGGGGCCGATTGGCCGCGAG CGCGTCCACTACGAAGCCCCTGCATCGGAGCGGCTCGACGCGGAAATGGCGCGTTTTCTCGACTGGTTCGAGACGGCGGC ACCCGACCCCGTCCTGAAAGCCGGAATCGCGCACCTATGGTTTGTCACCATCCACCCCTTCGATGACGGCAACGGGCGCA TAGCGCGTGCCATCGCCGACCTTGCGCTGGCGCGCGCGGAGGGCACCGCACAGCGTTTCTACAGTATGTCCGCGCAAATC CGGGTCGAGCGCAAAGCCTATTACGATATGCTGGAGCGGGCGCAGAAGGGCGACTTGGACATCACGCCCTGGCTGCTGTG GTTCATCGGCTGCCTTGATCGCGCCTTCGACGGCGCTGAAACCATCCTCGCCAGCGTCATGCGCAAGGCGCGGTTTTGGG AATCGGTCGCGGGCCAGCCCTTGAACGAACGCCAGCGCAAGGTCGTCAACCGTCTGCTGGACGGCTTCGAGGGCAAGCTT ACCAATGCCAAATGGGCGGCGATCACCAAGGCATCGTCCGATACCGCCCTGCGCGACATCAACGATTTGCTCCGGCGCGG CATCCTTGAGAAGGAGCCGGCCGGTGGGCGCAGCACCAGCTATTCACTGGTGCTGCCCGAGTCCTGA
Upstream 100 bases:
>100_bases ATGCGGTGAAAGCCGCCTTATTCGCCGCATATCATGCGGTGAATATTCTTGCCCTTTGCGGTGAATAATCGCTATATTCG CCGCAGAAAGTGCGGTGAAT
Downstream 100 bases:
>100_bases TCCGACCGAGTCGACCTCGTTACATCTTCAGCGATCTCGTTCCTGAACCGCGGCCCAAGCTCCATGCGCCGGTTCAGCAT GTCTACAAACCGCTCCCATC
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: Fic Family Protein; Xin-Antitoxin System Toxin Component Fic Family; Filamentation Induced By Camp Protein Fic; Cell Filamentation Protein; Fic Protein Family; Filamentation Induced By CAMP Protein Family Protein; -Like Protein; Homolog; Transcription Regulator
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MVYIHELPDWPNLRWSDQQLAQPLAAVRHRQGRLIGHMEALGFPLREEAVLQALTEDVIKSSEIEGEVLDREQVRSSIAR RLGMDIGGLVEADRNVEGVVEMMLDATQNYAQPLTAERLFGWHAALFPTGRSGMSRITVGAWRTAEAGPMQVVSGPIGRE RVHYEAPASERLDAEMARFLDWFETAAPDPVLKAGIAHLWFVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQI RVERKAYYDMLERAQKGDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQPLNERQRKVVNRLLDGFEGKL TNAKWAAITKASSDTALRDINDLLRRGILEKEPAGGRSTSYSLVLPES
Sequences:
>Translated_368_residues MVYIHELPDWPNLRWSDQQLAQPLAAVRHRQGRLIGHMEALGFPLREEAVLQALTEDVIKSSEIEGEVLDREQVRSSIAR RLGMDIGGLVEADRNVEGVVEMMLDATQNYAQPLTAERLFGWHAALFPTGRSGMSRITVGAWRTAEAGPMQVVSGPIGRE RVHYEAPASERLDAEMARFLDWFETAAPDPVLKAGIAHLWFVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQI RVERKAYYDMLERAQKGDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQPLNERQRKVVNRLLDGFEGKL TNAKWAAITKASSDTALRDINDLLRRGILEKEPAGGRSTSYSLVLPES >Mature_368_residues MVYIHELPDWPNLRWSDQQLAQPLAAVRHRQGRLIGHMEALGFPLREEAVLQALTEDVIKSSEIEGEVLDREQVRSSIAR RLGMDIGGLVEADRNVEGVVEMMLDATQNYAQPLTAERLFGWHAALFPTGRSGMSRITVGAWRTAEAGPMQVVSGPIGRE RVHYEAPASERLDAEMARFLDWFETAAPDPVLKAGIAHLWFVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQI RVERKAYYDMLERAQKGDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQPLNERQRKVVNRLLDGFEGKL TNAKWAAITKASSDTALRDINDLLRRGILEKEPAGGRSTSYSLVLPES
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41178; Mature: 41178
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYIHELPDWPNLRWSDQQLAQPLAAVRHRQGRLIGHMEALGFPLREEAVLQALTEDVIK CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH SSEIEGEVLDREQVRSSIARRLGMDIGGLVEADRNVEGVVEMMLDATQNYAQPLTAERLF HCCCCCHHCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH GWHAALFPTGRSGMSRITVGAWRTAEAGPMQVVSGPIGRERVHYEAPASERLDAEMARFL HHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH DWFETAAPDPVLKAGIAHLWFVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQI HHHHHCCCCHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE RVERKAYYDMLERAQKGDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQP EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC LNERQRKVVNRLLDGFEGKLTNAKWAAITKASSDTALRDINDLLRRGILEKEPAGGRSTS CCHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC YSLVLPES EEEEECCC >Mature Secondary Structure MVYIHELPDWPNLRWSDQQLAQPLAAVRHRQGRLIGHMEALGFPLREEAVLQALTEDVIK CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH SSEIEGEVLDREQVRSSIARRLGMDIGGLVEADRNVEGVVEMMLDATQNYAQPLTAERLF HCCCCCHHCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH GWHAALFPTGRSGMSRITVGAWRTAEAGPMQVVSGPIGRERVHYEAPASERLDAEMARFL HHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH DWFETAAPDPVLKAGIAHLWFVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQI HHHHHCCCCHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE RVERKAYYDMLERAQKGDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQP EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC LNERQRKVVNRLLDGFEGKLTNAKWAAITKASSDTALRDINDLLRRGILEKEPAGGRSTS CCHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC YSLVLPES EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA