| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488079
Identifier: 103488079
GI number: 103488079
Start: 2741705
End: 2743831
Strand: Direct
Name: 103488079
Synonym: Sala_2601
Alternate gene names: NA
Gene position: 2741705-2743831 (Clockwise)
Preceding gene: 103488078
Following gene: 103488094
Centisome position: 81.96
GC content: 60.32
Gene sequence:
>2127_bases ATGTTGACCGGCATCGCGCTGCTGGCGGCGGTCACCGCCGGTATTCCGGCTCACGGGGCGGATCCCTGTTCCGCGTTTGA GCAGGATGCGGCGACGCTTGCGCCTCCTCGCGTCATGACCTCACGCGACCTTGCAACCATTTCCGACATCGGCCGATCGA GCCCGTTCGATACGGAAAGCCCGTTCAGCCTATCACCCGATGGCCGCCAGATTGCCTTGATGGTGCGGCGCGGTAATCCG GAAACGAACAGCTTCTGCCAGAGACTCATTCTGGTCCCTCGATCGGGATCGGGCAGTCACGTCGAGCTGGACCGAGGCGG CCAATTCATCCGTACTCTCTTCGATCTGCGCAATTTGGCGGCGGTGCGTGCGGGGACCGCACAGATCATCACGCCGCGCT GGTCGCCCGACGGGGCAACGATCGCTTATCTCAAACGGGTCACTGACAACACGCAGGTCTGGATCGTCCCCTCCACGGGA GGCGTTGCCCGTGCTGCAACGGATCTCGATTTTGAAGTTGAGGATTTCGCCTGGGGCGCTGACGGAAAGAACCTAATAGT GGCAGGGCGTCCCGACCTCGCCAAGGCCGAGGCGATGATCGACGAAGAAGCGAGCAGGGGCTATCTGTTCGACGCGCGTT TCAGTCCCATGATGTCCGATCGCCCCTTCCCGGTGGGAAGCTACCCGACGCGATACTTCCATGTCGCTTTGTCGGATCAT GACCGGCGTGACGCATCGGTCGAGGAAATAGCGCTGCTCGATCCTTCAGCCAGCGCTGACAGGCCGCCGGACGCGATCCG GTTCGCGGCTGACGGGCGCGGCAATGTAGCATGGACCCGGAAACTAGACCGGTCCCTCCTCATCTCGCCCTTCCAACTGC ACATTCGGTGGCGCTCCGGCAGCACCACGATATGCGACACAAGTACCTGCGGCGGCATCCAGCGTCTATGGTGGATGCCA AAGAGCGACGTCCTGCTGTTCCTCGCCCGAGATGGATGGGGAGGAAGCCGTACCACTCTCTATCGGTGGAATGTCGGCGC CAAAGCCCCGGTTGCCGTGATGAGCACCAAAGATGCGTTGATCGGCTGCGCATTGAACGCGGCCGAACTGATCTGCATGC GCGAAGGCTCGCGACGAACCCGGCGCCTCGTCGCGATCGACATCCACACGATGCGATCGCGAACGATTTTCGATCCCAAT CCCCAGATGGCCCGGTTGCGCCTTGGCGAGGTCCATCGGCTGCGATTCCGCAATGCTTTCGGCATGGAGTGCTTTGCTGA TCTGGTTCTGCCGCCCAGCGCAGAGACAGACGAAAAGCTTCCGATGGTTGTGGTGCAATATAACAGCCGCGGCTTTCTCC GTGGCGGTACGGGTGATGAAGTCCCTATTCAGGTATTAGCTGGTCGAGGCTTCGCCGTGCTGAGCTTTGAACGCCCATTC GGCGTGCCGGGAACGCGGGAAGCACGAAGCGAGCTCGAATATCGACAATTGGCGCGCAAGGATTGGATCGATCGCCGCAG CGTTCAGTCCGCGCTCGAGGAAGCTGTTCGCGGGGCAATCGCAACCGGACTGATCGATCCCGACCGGATCGGCATTTCCG GGTTCAGCGAAGGCACGACAATGACCCAATGGGCGCTCATCAACAGCCGGATCTTCAAGGTCGCTTCCCTTGGCGTTTGC TGCGAGGACAAGGTGGCGCTGCCGCTCAACGGCGGCACTGGCTACGAAAACTATCTGAAGGAGATGGGCTATCCCCTCTT CGAAGATAGTAATGATCGCTTCTGGAACCCGCTTTCCCTGGCTCAAAACGCGGGCAAGATTGAGGTGCCCATCCTGGTGC AGACAAGCGACGATGAATATGAAGCGGGTCTGGATGTCATGGAGGCTTTTCGCAGGCGCGGCAATCCCATCGAAATGTAT GTGTTCAAGGATGAGCCACATATCAAATGGCAGCCTGCGCACCGGTTGGCGATATACGAGCGGAATGTCGATTGGTTTGA ATTCTGGTTGATGAGGCGAATGGATTGTTCGCCGGGCAAGCGTGCCCAGTATGCCCGATGGCAGACCATGCGGGGCGCCC CGGATTTATCGGCCCAATGCGCTATCGCTGCTTCCGGCGGACCGTGA
Upstream 100 bases:
>100_bases ACATCATTCGGGTAACCGGCTCAACAGACACGCCCTACGATTCAACGAATTATTCGGCGACCGGTCGCTTTCTCGGATTG ACCGTATCCCGGAGCTGGTG
Downstream 100 bases:
>100_bases CCGCGCCCAAGCCTCTGCGTCGGCAAGATCAAGAATACGGTAGAGGAGTTGGTCGCGGCTTGTCCGCGCGCTGGACAGAG CCTGCTCCACGGCCATGGCA
Product: dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
Products: NA
Alternate protein names: X-Pro Dipeptidyl-Peptidase; Acyl-Peptide Hydrolase; Peptidase S9 Prolyl Oligopeptidase Active Site Region
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP
Sequences:
>Translated_708_residues MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP >Mature_708_residues MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78450; Mature: 78450
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTES CCHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC PFSLSPDGRQIALMVRRGNPETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLA CCCCCCCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHH AVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTGGVARAATDLDFEVEDFAWGA HHHCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEHHHEEECC DGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH CCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCC DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSG CCCCCCHHEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHCCCEEEEEEEEECC STTICDTSTCGGIQRLWWMPKSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDAL CCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCE IGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPNPQMARLRLGEVHRLRFRNAF EEEECCHHEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCC GMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF CHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCEEEEEECCCC GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC MTQWALINSRIFKVASLGVCCEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSL EEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCHHHH AQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMYVFKDEPHIKWQPAHRLAIYE HCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEEECCCCCCEECCCCEEEEEE RNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCC >Mature Secondary Structure MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTES CCHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC PFSLSPDGRQIALMVRRGNPETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLA CCCCCCCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHH AVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTGGVARAATDLDFEVEDFAWGA HHHCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEHHHEEECC DGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH CCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCC DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSG CCCCCCHHEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHCCCEEEEEEEEECC STTICDTSTCGGIQRLWWMPKSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDAL CCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCE IGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPNPQMARLRLGEVHRLRFRNAF EEEECCHHEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCC GMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF CHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCEEEEEECCCC GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC MTQWALINSRIFKVASLGVCCEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSL EEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCHHHH AQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMYVFKDEPHIKWQPAHRLAIYE HCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEEECCCCCCEECCCCEEEEEE RNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA