Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488079

Identifier: 103488079

GI number: 103488079

Start: 2741705

End: 2743831

Strand: Direct

Name: 103488079

Synonym: Sala_2601

Alternate gene names: NA

Gene position: 2741705-2743831 (Clockwise)

Preceding gene: 103488078

Following gene: 103488094

Centisome position: 81.96

GC content: 60.32

Gene sequence:

>2127_bases
ATGTTGACCGGCATCGCGCTGCTGGCGGCGGTCACCGCCGGTATTCCGGCTCACGGGGCGGATCCCTGTTCCGCGTTTGA
GCAGGATGCGGCGACGCTTGCGCCTCCTCGCGTCATGACCTCACGCGACCTTGCAACCATTTCCGACATCGGCCGATCGA
GCCCGTTCGATACGGAAAGCCCGTTCAGCCTATCACCCGATGGCCGCCAGATTGCCTTGATGGTGCGGCGCGGTAATCCG
GAAACGAACAGCTTCTGCCAGAGACTCATTCTGGTCCCTCGATCGGGATCGGGCAGTCACGTCGAGCTGGACCGAGGCGG
CCAATTCATCCGTACTCTCTTCGATCTGCGCAATTTGGCGGCGGTGCGTGCGGGGACCGCACAGATCATCACGCCGCGCT
GGTCGCCCGACGGGGCAACGATCGCTTATCTCAAACGGGTCACTGACAACACGCAGGTCTGGATCGTCCCCTCCACGGGA
GGCGTTGCCCGTGCTGCAACGGATCTCGATTTTGAAGTTGAGGATTTCGCCTGGGGCGCTGACGGAAAGAACCTAATAGT
GGCAGGGCGTCCCGACCTCGCCAAGGCCGAGGCGATGATCGACGAAGAAGCGAGCAGGGGCTATCTGTTCGACGCGCGTT
TCAGTCCCATGATGTCCGATCGCCCCTTCCCGGTGGGAAGCTACCCGACGCGATACTTCCATGTCGCTTTGTCGGATCAT
GACCGGCGTGACGCATCGGTCGAGGAAATAGCGCTGCTCGATCCTTCAGCCAGCGCTGACAGGCCGCCGGACGCGATCCG
GTTCGCGGCTGACGGGCGCGGCAATGTAGCATGGACCCGGAAACTAGACCGGTCCCTCCTCATCTCGCCCTTCCAACTGC
ACATTCGGTGGCGCTCCGGCAGCACCACGATATGCGACACAAGTACCTGCGGCGGCATCCAGCGTCTATGGTGGATGCCA
AAGAGCGACGTCCTGCTGTTCCTCGCCCGAGATGGATGGGGAGGAAGCCGTACCACTCTCTATCGGTGGAATGTCGGCGC
CAAAGCCCCGGTTGCCGTGATGAGCACCAAAGATGCGTTGATCGGCTGCGCATTGAACGCGGCCGAACTGATCTGCATGC
GCGAAGGCTCGCGACGAACCCGGCGCCTCGTCGCGATCGACATCCACACGATGCGATCGCGAACGATTTTCGATCCCAAT
CCCCAGATGGCCCGGTTGCGCCTTGGCGAGGTCCATCGGCTGCGATTCCGCAATGCTTTCGGCATGGAGTGCTTTGCTGA
TCTGGTTCTGCCGCCCAGCGCAGAGACAGACGAAAAGCTTCCGATGGTTGTGGTGCAATATAACAGCCGCGGCTTTCTCC
GTGGCGGTACGGGTGATGAAGTCCCTATTCAGGTATTAGCTGGTCGAGGCTTCGCCGTGCTGAGCTTTGAACGCCCATTC
GGCGTGCCGGGAACGCGGGAAGCACGAAGCGAGCTCGAATATCGACAATTGGCGCGCAAGGATTGGATCGATCGCCGCAG
CGTTCAGTCCGCGCTCGAGGAAGCTGTTCGCGGGGCAATCGCAACCGGACTGATCGATCCCGACCGGATCGGCATTTCCG
GGTTCAGCGAAGGCACGACAATGACCCAATGGGCGCTCATCAACAGCCGGATCTTCAAGGTCGCTTCCCTTGGCGTTTGC
TGCGAGGACAAGGTGGCGCTGCCGCTCAACGGCGGCACTGGCTACGAAAACTATCTGAAGGAGATGGGCTATCCCCTCTT
CGAAGATAGTAATGATCGCTTCTGGAACCCGCTTTCCCTGGCTCAAAACGCGGGCAAGATTGAGGTGCCCATCCTGGTGC
AGACAAGCGACGATGAATATGAAGCGGGTCTGGATGTCATGGAGGCTTTTCGCAGGCGCGGCAATCCCATCGAAATGTAT
GTGTTCAAGGATGAGCCACATATCAAATGGCAGCCTGCGCACCGGTTGGCGATATACGAGCGGAATGTCGATTGGTTTGA
ATTCTGGTTGATGAGGCGAATGGATTGTTCGCCGGGCAAGCGTGCCCAGTATGCCCGATGGCAGACCATGCGGGGCGCCC
CGGATTTATCGGCCCAATGCGCTATCGCTGCTTCCGGCGGACCGTGA

Upstream 100 bases:

>100_bases
ACATCATTCGGGTAACCGGCTCAACAGACACGCCCTACGATTCAACGAATTATTCGGCGACCGGTCGCTTTCTCGGATTG
ACCGTATCCCGGAGCTGGTG

Downstream 100 bases:

>100_bases
CCGCGCCCAAGCCTCTGCGTCGGCAAGATCAAGAATACGGTAGAGGAGTTGGTCGCGGCTTGTCCGCGCGCTGGACAGAG
CCTGCTCCACGGCCATGGCA

Product: dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein

Products: NA

Alternate protein names: X-Pro Dipeptidyl-Peptidase; Acyl-Peptide Hydrolase; Peptidase S9 Prolyl Oligopeptidase Active Site Region

Number of amino acids: Translated: 708; Mature: 708

Protein sequence:

>708_residues
MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP
ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG
GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH
DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP
KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN
PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF
GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC
CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY
VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP

Sequences:

>Translated_708_residues
MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP
ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG
GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH
DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP
KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN
PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF
GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC
CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY
VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP
>Mature_708_residues
MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTESPFSLSPDGRQIALMVRRGNP
ETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLAAVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTG
GVARAATDLDFEVEDFAWGADGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH
DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSGSTTICDTSTCGGIQRLWWMP
KSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDALIGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPN
PQMARLRLGEVHRLRFRNAFGMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF
GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTTMTQWALINSRIFKVASLGVC
CEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSLAQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMY
VFKDEPHIKWQPAHRLAIYERNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP

Specific function: Unknown

COG id: COG1506

COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78450; Mature: 78450

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTES
CCHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
PFSLSPDGRQIALMVRRGNPETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLA
CCCCCCCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHH
AVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTGGVARAATDLDFEVEDFAWGA
HHHCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEHHHEEECC
DGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCC
DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSG
CCCCCCHHEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHCCCEEEEEEEEECC
STTICDTSTCGGIQRLWWMPKSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDAL
CCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCE
IGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPNPQMARLRLGEVHRLRFRNAF
EEEECCHHEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCC
GMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF
CHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCEEEEEECCCC
GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
MTQWALINSRIFKVASLGVCCEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSL
EEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCHHHH
AQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMYVFKDEPHIKWQPAHRLAIYE
HCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEEECCCCCCEECCCCEEEEEE
RNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MLTGIALLAAVTAGIPAHGADPCSAFEQDAATLAPPRVMTSRDLATISDIGRSSPFDTES
CCHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
PFSLSPDGRQIALMVRRGNPETNSFCQRLILVPRSGSGSHVELDRGGQFIRTLFDLRNLA
CCCCCCCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHH
AVRAGTAQIITPRWSPDGATIAYLKRVTDNTQVWIVPSTGGVARAATDLDFEVEDFAWGA
HHHCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEHHHEEECC
DGKNLIVAGRPDLAKAEAMIDEEASRGYLFDARFSPMMSDRPFPVGSYPTRYFHVALSDH
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCC
DRRDASVEEIALLDPSASADRPPDAIRFAADGRGNVAWTRKLDRSLLISPFQLHIRWRSG
CCCCCCHHEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHCCCEEEEEEEEECC
STTICDTSTCGGIQRLWWMPKSDVLLFLARDGWGGSRTTLYRWNVGAKAPVAVMSTKDAL
CCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCE
IGCALNAAELICMREGSRRTRRLVAIDIHTMRSRTIFDPNPQMARLRLGEVHRLRFRNAF
EEEECCHHEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCC
GMECFADLVLPPSAETDEKLPMVVVQYNSRGFLRGGTGDEVPIQVLAGRGFAVLSFERPF
CHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCEEEEEECCCC
GVPGTREARSELEYRQLARKDWIDRRSVQSALEEAVRGAIATGLIDPDRIGISGFSEGTT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
MTQWALINSRIFKVASLGVCCEDKVALPLNGGTGYENYLKEMGYPLFEDSNDRFWNPLSL
EEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCHHHH
AQNAGKIEVPILVQTSDDEYEAGLDVMEAFRRRGNPIEMYVFKDEPHIKWQPAHRLAIYE
HCCCCCEEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEEECCCCCCEECCCCEEEEEE
RNVDWFEFWLMRRMDCSPGKRAQYARWQTMRGAPDLSAQCAIAASGGP
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA