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The map label for this gene is raiI [H]

Identifier: 103488067

GI number: 103488067

Start: 2731970

End: 2732596

Strand: Direct

Name: raiI [H]

Synonym: Sala_2589

Alternate gene names: 103488067

Gene position: 2731970-2732596 (Clockwise)

Preceding gene: 103488066

Following gene: 103488068

Centisome position: 81.67

GC content: 63.48

Gene sequence:

>627_bases
ATGCCAGAGGAGATCGGGGAACGGATCGAGATTGATGAGGACGGGGCGTTGCGGGCGATGTTCCGAGCGCGCAAGGAAAT
CTTCATCGACCTTCTGAAATGGGACCTCCCCATCCTGGCAAACGAGTTCGAGGTCGATCAGTTCGACCGCCAAGCAGAAT
ATCTCATCCTGCTCGAGCAGGGCGTCAGGCACCGTGCGTCGACGCGATTGCTCCGGACCGACCAACCACATCTGCTCGGC
GACCTTTATCCGCATCTCTGCGCTGGGCCGGTGCCGGTCGGCCCGACTATTCGCGAGATCACCCGTTTTTGCCTCGATCG
CCACCAGCGGGCACCCGAGCGGCGCAGCGCCCGCAACCAGCTCGTCACCGCACTTGCCGAGCATGCGCTGGCGACGGGTA
TCACGTCCTACACCGGAGTCGCCGAGCAGGAGTGGTTCGAGCAAATCCGGCGTTTCGGCTGGGACTGCAAAGCACTGGGT
CAGCCCCTCGATCACGAGGGCCGCCGGCTTATCGCGCTCCACATCCGGATCGATGACGAAACGATCAGTGGCTTGCAGGC
CGGCGGCACCTATGAGGCGCCGCGGTTGATGCTGGCGGCTCCGCGCATAGGTGGAAACGGCCGATGA

Upstream 100 bases:

>100_bases
TCCCTCTGGCCCGCGTGCTGTCTCTCCCCATTTCTTGGTATGGGCGGCTCGCGGGCAGCGATGTTCTTTCCTGCGCGGTA
TCAACCGCGGAGAAAAGGTC

Downstream 100 bases:

>100_bases
CCAGACTCGCCTCTCTCCGCGGCGCAGCGCCGGCCTGGATCGATCAACTCCGCAACAAGGGCTATTGCATCATTCCCGAT
GCTTTGCCGGCCGGAGCCAT

Product: autoinducer synthesis protein

Products: NA

Alternate protein names: Autoinducer synthesis protein raiI [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MPEEIGERIEIDEDGALRAMFRARKEIFIDLLKWDLPILANEFEVDQFDRQAEYLILLEQGVRHRASTRLLRTDQPHLLG
DLYPHLCAGPVPVGPTIREITRFCLDRHQRAPERRSARNQLVTALAEHALATGITSYTGVAEQEWFEQIRRFGWDCKALG
QPLDHEGRRLIALHIRIDDETISGLQAGGTYEAPRLMLAAPRIGGNGR

Sequences:

>Translated_208_residues
MPEEIGERIEIDEDGALRAMFRARKEIFIDLLKWDLPILANEFEVDQFDRQAEYLILLEQGVRHRASTRLLRTDQPHLLG
DLYPHLCAGPVPVGPTIREITRFCLDRHQRAPERRSARNQLVTALAEHALATGITSYTGVAEQEWFEQIRRFGWDCKALG
QPLDHEGRRLIALHIRIDDETISGLQAGGTYEAPRLMLAAPRIGGNGR
>Mature_207_residues
PEEIGERIEIDEDGALRAMFRARKEIFIDLLKWDLPILANEFEVDQFDRQAEYLILLEQGVRHRASTRLLRTDQPHLLGD
LYPHLCAGPVPVGPTIREITRFCLDRHQRAPERRSARNQLVTALAEHALATGITSYTGVAEQEWFEQIRRFGWDCKALGQ
PLDHEGRRLIALHIRIDDETISGLQAGGTYEAPRLMLAAPRIGGNGR

Specific function: Required for the synthesis of autoinducer molecules which bind to raiR and that are involved in the restriction of nodule number [H]

COG id: COG3916

COG function: function code TQ; N-acyl-L-homoserine lactone synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the autoinducer synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016181
- InterPro:   IPR001690
- InterPro:   IPR018311 [H]

Pfam domain/function: PF00765 Autoind_synth [H]

EC number: =2.3.1.184 [H]

Molecular weight: Translated: 23682; Mature: 23551

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEEIGERIEIDEDGALRAMFRARKEIFIDLLKWDLPILANEFEVDQFDRQAEYLILLEQ
CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCHHHHHHHHHH
GVRHRASTRLLRTDQPHLLGDLYPHLCAGPVPVGPTIREITRFCLDRHQRAPERRSARNQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
LVTALAEHALATGITSYTGVAEQEWFEQIRRFGWDCKALGQPLDHEGRRLIALHIRIDDE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCH
TISGLQAGGTYEAPRLMLAAPRIGGNGR
HHHHHHCCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
PEEIGERIEIDEDGALRAMFRARKEIFIDLLKWDLPILANEFEVDQFDRQAEYLILLEQ
CCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCHHHHHHHHHH
GVRHRASTRLLRTDQPHLLGDLYPHLCAGPVPVGPTIREITRFCLDRHQRAPERRSARNQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
LVTALAEHALATGITSYTGVAEQEWFEQIRRFGWDCKALGQPLDHEGRRLIALHIRIDDE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCH
TISGLQAGGTYEAPRLMLAAPRIGGNGR
HHHHHHCCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]