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The map label for this gene is fecI [H]

Identifier: 103488008

GI number: 103488008

Start: 2664950

End: 2665558

Strand: Direct

Name: fecI [H]

Synonym: Sala_2529

Alternate gene names: 103488008

Gene position: 2664950-2665558 (Clockwise)

Preceding gene: 103488007

Following gene: 103488009

Centisome position: 79.67

GC content: 61.58

Gene sequence:

>609_bases
GTGTCTTCCTGTACCTGCTGCGACGACGCTCCGCTACGCCACCCCTTTTCGGTGTCGTCGGCCTGTCATGTGCATCCCGA
CGATCGCCCGGCACCGGCCGAACATCGGCCCGCCACCGGACAGGATCTGGAGACGGTGTATCGCACGCACCGCTCGTCGC
TCTTTCATTTCCTGCGCCGCAAGGCGGGACCCGAGGAAGCATCCGACCTGGTGCAGGAAGTCTTTGCTCGTGCGGCAGGC
AGCGAGCAACGGCATCAGCTCGTCAACCCGGGCGGCTTTCTTCGCCGGATTGCGCAGAATCTGCTGATCGACCGGGCGCG
ACGCCGCAAGTCTGCGCCGAAAGCTCTATTTTCGCTGCGCGAAGAAAGCGATGCCGTGACGCCCGCCACGCAGGAATGGA
ATCTCGAAGCGGCGGACCTTCTGGAACTTTACGAGAAGGCCGTTGACGCAATGCCGCCCAAGACGCGCCGCGTCTTTCTG
ATGCACCGGGTGGACGAACTTTCCTATCGCGAGATACATGAACAGCTCGGCATCAGCATTGCGACGGTGGAATATCATAT
GATGAAGGCGCTCGGTCGGATCGCGAAGGTGGTGGACAGCGAGAAATGA

Upstream 100 bases:

>100_bases
GACCCTGGATCGCACAAGCGACCGAACGGCGGCGCAGCACTGGGAGACGAGCATTTCGCTTCGGCGGGATGGTTCGGCTC
GTGCCTTCGGGACAATTGCT

Downstream 100 bases:

>100_bases
CGAAGGCCGGCGACGACGATTATCCGGTCGACGAGGTTGCGCGGGCTTGGCTCGTCAAGATGCGCGGCGAGGATGCGGAG
GTGCTGCGCGGCGAATTCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSSCTCCDDAPLRHPFSVSSACHVHPDDRPAPAEHRPATGQDLETVYRTHRSSLFHFLRRKAGPEEASDLVQEVFARAAG
SEQRHQLVNPGGFLRRIAQNLLIDRARRRKSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVFL
MHRVDELSYREIHEQLGISIATVEYHMMKALGRIAKVVDSEK

Sequences:

>Translated_202_residues
MSSCTCCDDAPLRHPFSVSSACHVHPDDRPAPAEHRPATGQDLETVYRTHRSSLFHFLRRKAGPEEASDLVQEVFARAAG
SEQRHQLVNPGGFLRRIAQNLLIDRARRRKSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVFL
MHRVDELSYREIHEQLGISIATVEYHMMKALGRIAKVVDSEK
>Mature_201_residues
SSCTCCDDAPLRHPFSVSSACHVHPDDRPAPAEHRPATGQDLETVYRTHRSSLFHFLRRKAGPEEASDLVQEVFARAAGS
EQRHQLVNPGGFLRRIAQNLLIDRARRRKSAPKALFSLREESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVFLM
HRVDELSYREIHEQLGISIATVEYHMMKALGRIAKVVDSEK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=152, Percent_Identity=33.5526315789474, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22880; Mature: 22749

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSCTCCDDAPLRHPFSVSSACHVHPDDRPAPAEHRPATGQDLETVYRTHRSSLFHFLRR
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAGPEEASDLVQEVFARAAGSEQRHQLVNPGGFLRRIAQNLLIDRARRRKSAPKALFSLR
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
EESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVFLMHRVDELSYREIHEQLGISI
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
ATVEYHMMKALGRIAKVVDSEK
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSCTCCDDAPLRHPFSVSSACHVHPDDRPAPAEHRPATGQDLETVYRTHRSSLFHFLRR
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAGPEEASDLVQEVFARAAGSEQRHQLVNPGGFLRRIAQNLLIDRARRRKSAPKALFSLR
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
EESDAVTPATQEWNLEAADLLELYEKAVDAMPPKTRRVFLMHRVDELSYREIHEQLGISI
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
ATVEYHMMKALGRIAKVVDSEK
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]