| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is merA [H]
Identifier: 103487991
GI number: 103487991
Start: 2647410
End: 2648849
Strand: Direct
Name: merA [H]
Synonym: Sala_2512
Alternate gene names: 103487991
Gene position: 2647410-2648849 (Clockwise)
Preceding gene: 103487990
Following gene: 103487992
Centisome position: 79.14
GC content: 63.82
Gene sequence:
>1440_bases ATGAGTGATTGCTGCAATCGGGGCGACGGCTCTCAGGCCAAGAAGTACGACCTTATCGTCGTGGGCGGCGGCTCGGCTGG GTTCTCGGCCGCGATTACCGCGGCGGAGCAAGGAGCCCAAGTCGCCGTTATCGGTGCCGGCACCATCGGCGGAACCTGCG TCAACGTCGGCTGCGTTCCTTCCAAGGCGCTGATCCGCGCGGTCGAGAGCATTCACCACGCGAATGCCGCGCCGATGCGG TTCAACGGTGTCGAGGCCGGGGCACGAATGGCCGATTGGGGCAAGGTGATCGCCGAAAAGGACTCGCTCGTCTCGGGCCT TCGTCAGGCGAAATATGCGGATCTCCTGCCTCTCTACAATAATATCGCCTACCATGAAGGCACGGCGCGGCTCGTCGAAA ATGGCGTCGAGGCCGGTGGAAGGCGGTTCACCGCTGACCGGATCGTGATTGCGACAGGTACGCGTCCGGCGGTGCCGGCT ATCCCGGGCCTTCCGGACGTCGATGCGCTCGACAGCACTACCGCGCTCGACCTGACCGAGTTGCCGAAATCGATGATCGT CCTCGGGGGCGGCTATATCGGTGTGGAACTCGCCCAGATGTTCTCCCGCGCCGGCGTCGACGTGACGCTCGTTTTCCGCA GCCGCCTTCTCCCCGATATGGAGCCGGAGATCGGTGCCGCGCTGACCGACTATCTTTCGAGCGAAGGCATCACGGTTCTG GGCGACCTCGCCTATCAGTCGGCCCACAAGACGGCGGAAGGGGGCACTGCGCTCACCGTCCTGCGCAACGGGGTCGCCGA AACCATCGTCGCGGAGCGCCTTCTCGTAGCGACCGGGCGCGCCCCGAATGTGGAGGACCTCGGTCTCATCGAGGCAGGGG TGAAGCAGACGCTCAGCGGTGCCATCATTGTCGATGACCATATGCGAACCTCGGTGCGCGGCGTCTATGCCGCCGGCGAT GTGACGGGCCGAGACCAGTTCGTTTACATGGCAGCCTATGGCGCAAAGATCGCCGCCAAGAACGCCTTGAACGGCGATAG CCTGCGGTACGACAATTCGGCCATGCCGGCCGTCGTATTCAGCGATCCGCAGGTAGCCAGTGTCGGCTTCACCGAAGCGC AGGCTATCGCGGCAGGATATGCAACGCGAACCTCGACCCTCCCGCTCGAGAATGTTCCGCGCGCATTGGCGGCTCGCGAC ACGCGCGGCCTGATCAAGCTGGTTGCGGATGGCCGGACCCGCAAACTGCTGGGCGCGCATATCTTGGCGCCGGAAGGTGC GGACAGTATCCAGACCGCCGCCATGGCGATCCGCTGCGGCCTCACGATCGACGATCTGGCGGAGATGATCTTCCCCTATC TGACCACGGTCGAAGGACTGAAGCTGGCTGCGCAGACATTCGATCGGGATGTGAAAAGGCTGTCCTGCTGTGCAGGATAA
Upstream 100 bases:
>100_bases ACGGTCACCTATGACGACGCCAAGACCAGCACCGCGGCGTTGATCGCGGCGACCACCAACGCTGGCTACCCTTCCCGAGT CCGCAAGTGAAAGTCGTATC
Downstream 100 bases:
>100_bases GATTGCTCGGTCGCGTCGCGGCGGTGAGATGACATGAGTAGCCCGCGCGGTTCCGATCCCGCCAGCGGCGCCGGGGATTG GTCGGGTAACTGGCGCACGC
Product: mercuric reductase MerA
Products: NA
Alternate protein names: Hg(II) reductase [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MSDCCNRGDGSQAKKYDLIVVGGGSAGFSAAITAAEQGAQVAVIGAGTIGGTCVNVGCVPSKALIRAVESIHHANAAPMR FNGVEAGARMADWGKVIAEKDSLVSGLRQAKYADLLPLYNNIAYHEGTARLVENGVEAGGRRFTADRIVIATGTRPAVPA IPGLPDVDALDSTTALDLTELPKSMIVLGGGYIGVELAQMFSRAGVDVTLVFRSRLLPDMEPEIGAALTDYLSSEGITVL GDLAYQSAHKTAEGGTALTVLRNGVAETIVAERLLVATGRAPNVEDLGLIEAGVKQTLSGAIIVDDHMRTSVRGVYAAGD VTGRDQFVYMAAYGAKIAAKNALNGDSLRYDNSAMPAVVFSDPQVASVGFTEAQAIAAGYATRTSTLPLENVPRALAARD TRGLIKLVADGRTRKLLGAHILAPEGADSIQTAAMAIRCGLTIDDLAEMIFPYLTTVEGLKLAAQTFDRDVKRLSCCAG
Sequences:
>Translated_479_residues MSDCCNRGDGSQAKKYDLIVVGGGSAGFSAAITAAEQGAQVAVIGAGTIGGTCVNVGCVPSKALIRAVESIHHANAAPMR FNGVEAGARMADWGKVIAEKDSLVSGLRQAKYADLLPLYNNIAYHEGTARLVENGVEAGGRRFTADRIVIATGTRPAVPA IPGLPDVDALDSTTALDLTELPKSMIVLGGGYIGVELAQMFSRAGVDVTLVFRSRLLPDMEPEIGAALTDYLSSEGITVL GDLAYQSAHKTAEGGTALTVLRNGVAETIVAERLLVATGRAPNVEDLGLIEAGVKQTLSGAIIVDDHMRTSVRGVYAAGD VTGRDQFVYMAAYGAKIAAKNALNGDSLRYDNSAMPAVVFSDPQVASVGFTEAQAIAAGYATRTSTLPLENVPRALAARD TRGLIKLVADGRTRKLLGAHILAPEGADSIQTAAMAIRCGLTIDDLAEMIFPYLTTVEGLKLAAQTFDRDVKRLSCCAG >Mature_478_residues SDCCNRGDGSQAKKYDLIVVGGGSAGFSAAITAAEQGAQVAVIGAGTIGGTCVNVGCVPSKALIRAVESIHHANAAPMRF NGVEAGARMADWGKVIAEKDSLVSGLRQAKYADLLPLYNNIAYHEGTARLVENGVEAGGRRFTADRIVIATGTRPAVPAI PGLPDVDALDSTTALDLTELPKSMIVLGGGYIGVELAQMFSRAGVDVTLVFRSRLLPDMEPEIGAALTDYLSSEGITVLG DLAYQSAHKTAEGGTALTVLRNGVAETIVAERLLVATGRAPNVEDLGLIEAGVKQTLSGAIIVDDHMRTSVRGVYAAGDV TGRDQFVYMAAYGAKIAAKNALNGDSLRYDNSAMPAVVFSDPQVASVGFTEAQAIAAGYATRTSTLPLENVPRALAARDT RGLIKLVADGRTRKLLGAHILAPEGADSIQTAAMAIRCGLTIDDLAEMIFPYLTTVEGLKLAAQTFDRDVKRLSCCAG
Specific function: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=470, Percent_Identity=30.8510638297872, Blast_Score=192, Evalue=4e-49, Organism=Homo sapiens, GI50301238, Length=457, Percent_Identity=31.9474835886214, Blast_Score=182, Evalue=6e-46, Organism=Homo sapiens, GI22035672, Length=454, Percent_Identity=29.9559471365639, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI33519430, Length=447, Percent_Identity=25.0559284116331, Blast_Score=123, Evalue=5e-28, Organism=Homo sapiens, GI33519428, Length=447, Percent_Identity=25.0559284116331, Blast_Score=123, Evalue=5e-28, Organism=Homo sapiens, GI33519426, Length=447, Percent_Identity=25.0559284116331, Blast_Score=123, Evalue=5e-28, Organism=Homo sapiens, GI148277071, Length=447, Percent_Identity=25.0559284116331, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI148277065, Length=447, Percent_Identity=25.0559284116331, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI291045266, Length=422, Percent_Identity=27.0142180094787, Blast_Score=119, Evalue=7e-27, Organism=Homo sapiens, GI291045268, Length=416, Percent_Identity=25.9615384615385, Blast_Score=99, Evalue=8e-21, Organism=Escherichia coli, GI1786307, Length=469, Percent_Identity=30.2771855010661, Blast_Score=194, Evalue=9e-51, Organism=Escherichia coli, GI87081717, Length=459, Percent_Identity=31.1546840958606, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI1789915, Length=454, Percent_Identity=32.15859030837, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI87082354, Length=467, Percent_Identity=26.9807280513919, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI1789065, Length=223, Percent_Identity=30.9417040358744, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI32565766, Length=471, Percent_Identity=30.7855626326964, Blast_Score=189, Evalue=3e-48, Organism=Caenorhabditis elegans, GI17557007, Length=498, Percent_Identity=27.710843373494, Blast_Score=157, Evalue=1e-38, Organism=Caenorhabditis elegans, GI71983429, Length=460, Percent_Identity=30.2173913043478, Blast_Score=151, Evalue=9e-37, Organism=Caenorhabditis elegans, GI71983419, Length=460, Percent_Identity=30.2173913043478, Blast_Score=151, Evalue=9e-37, Organism=Caenorhabditis elegans, GI71982272, Length=501, Percent_Identity=25.9481037924152, Blast_Score=115, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6321091, Length=477, Percent_Identity=30.8176100628931, Blast_Score=187, Evalue=4e-48, Organism=Saccharomyces cerevisiae, GI6325166, Length=473, Percent_Identity=29.1754756871036, Blast_Score=157, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6325240, Length=490, Percent_Identity=27.5510204081633, Blast_Score=118, Evalue=2e-27, Organism=Drosophila melanogaster, GI21358499, Length=466, Percent_Identity=30.68669527897, Blast_Score=192, Evalue=4e-49, Organism=Drosophila melanogaster, GI17737741, Length=492, Percent_Identity=29.4715447154472, Blast_Score=152, Evalue=3e-37, Organism=Drosophila melanogaster, GI24640553, Length=493, Percent_Identity=29.0060851926978, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI24640549, Length=493, Percent_Identity=29.0060851926978, Blast_Score=151, Evalue=8e-37, Organism=Drosophila melanogaster, GI24640551, Length=494, Percent_Identity=29.3522267206478, Blast_Score=151, Evalue=8e-37,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000815 - InterPro: IPR021179 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00403 HMA; PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.16.1.1 [H]
Molecular weight: Translated: 49838; Mature: 49707
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDCCNRGDGSQAKKYDLIVVGGGSAGFSAAITAAEQGAQVAVIGAGTIGGTCVNVGCVP CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCEEEEECCCC SKALIRAVESIHHANAAPMRFNGVEAGARMADWGKVIAEKDSLVSGLRQAKYADLLPLYN HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIAYHEGTARLVENGVEAGGRRFTADRIVIATGTRPAVPAIPGLPDVDALDSTTALDLTE CHHHCCCHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH LPKSMIVLGGGYIGVELAQMFSRAGVDVTLVFRSRLLPDMEPEIGAALTDYLSSEGITVL CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCEEE GDLAYQSAHKTAEGGTALTVLRNGVAETIVAERLLVATGRAPNVEDLGLIEAGVKQTLSG EHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC AIIVDDHMRTSVRGVYAAGDVTGRDQFVYMAAYGAKIAAKNALNGDSLRYDNSAMPAVVF EEEEECCHHHHHCEEEEECCCCCCCCEEEEEECCCHHHHCCCCCCCCEEECCCCCCEEEE SDPQVASVGFTEAQAIAAGYATRTSTLPLENVPRALAARDTRGLIKLVADGRTRKLLGAH CCCCEEECCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCEEEECCCCHHHHHHHE ILAPEGADSIQTAAMAIRCGLTIDDLAEMIFPYLTTVEGLKLAAQTFDRDVKRLSCCAG EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDCCNRGDGSQAKKYDLIVVGGGSAGFSAAITAAEQGAQVAVIGAGTIGGTCVNVGCVP CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCEEEEECCCC SKALIRAVESIHHANAAPMRFNGVEAGARMADWGKVIAEKDSLVSGLRQAKYADLLPLYN HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIAYHEGTARLVENGVEAGGRRFTADRIVIATGTRPAVPAIPGLPDVDALDSTTALDLTE CHHHCCCHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH LPKSMIVLGGGYIGVELAQMFSRAGVDVTLVFRSRLLPDMEPEIGAALTDYLSSEGITVL CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCEEE GDLAYQSAHKTAEGGTALTVLRNGVAETIVAERLLVATGRAPNVEDLGLIEAGVKQTLSG EHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC AIIVDDHMRTSVRGVYAAGDVTGRDQFVYMAAYGAKIAAKNALNGDSLRYDNSAMPAVVF EEEEECCHHHHHCEEEEECCCCCCCCEEEEEECCCHHHHCCCCCCCCEEECCCCCCEEEE SDPQVASVGFTEAQAIAAGYATRTSTLPLENVPRALAARDTRGLIKLVADGRTRKLLGAH CCCCEEECCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCEEEECCCCHHHHHHHE ILAPEGADSIQTAAMAIRCGLTIDDLAEMIFPYLTTVEGLKLAAQTFDRDVKRLSCCAG EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3037534 [H]