| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487987
Identifier: 103487987
GI number: 103487987
Start: 2645077
End: 2646087
Strand: Direct
Name: 103487987
Synonym: Sala_2508
Alternate gene names: NA
Gene position: 2645077-2646087 (Clockwise)
Preceding gene: 103487967
Following gene: 103487989
Centisome position: 79.07
GC content: 66.96
Gene sequence:
>1011_bases TTGAAACGCATTGCCCCCCTTCTCCTGCTCGCGGGCTGCGCAGCAGCCCCGGCGGTGCAGGCCGCCCCCGCTCCCGGCTG TGCCGCGGCGCTGGCCTATTCGTCGGCGCATCAAGGCGTCGCCGTGCTCGTCCTCGAGGACGGGAAGGTCCGCTGCTCCT CCGATGGCGTCTCGACACCGCAGGAACTCTGGTCGGGGACCAAGAGCCTGGTGGGCCTGATGGCGGCAGCGGCGGTCCAG GACAGGCTGCTCACGCTCGACGAACCTGCGTCGGCCACGCTCGCCGAATGGCGCGAGGACCCAAAAAAGGCCGCGATCAC GATCCGGCAATTGCTGGCGATGACCAGTGGACAGGCGTCGACCGTCGGTCGGCCACGGGGTTATCTCGACTCGGTGAACG CCCCGCTCGCCGCCGATCCCGGCACGAAATTCCAATATGGCCCCGCGCCGATGCAGATAATCGGCGAGATTATACGCCGC AAGCTGGCCGCCGCAAGCCTTGATGCCGATCCGCGCCGCTATCTCGAGCGCCGCATCCTGACCCCGGTCGGAGTGACGAT CGGCGATTGGCGCAATGGACCGGATGGCGCGCCTCTGATGCCGCAGGGGCTGGTACTCGCCGCAGAGCAATGGGCAAAAG TCGGCGAATTCGTGCGCCGCGGCGGCACGCAGGACGGCAAGGCGCTTGTCGATCCCGCGGCCTTGGCCGAGTTGTTCAAA GGAAGCGATGCCAACCCCGCCTATGGCCTGACCTGGTGGCTTCCGCGAGCGAGTCCCTCCGACGATCCTGTGACGCGCTC GACCGACATCGTTGCGCATGCGCCAACGCTCCCGGCCGACCTGGTCGTCGCGGCAGGCGCAGGCGACCAGCGCCTCTACG TCATCCCGTCACGGCGCCTGACGATCGTGCGGCAGGCGAGACTGGATATCGCAGCGCTTGCCGCCGGGAAAAAGAGTGGC TGGTCCGATACACATTTCCTGTCTTTCTTCCTCTCTCCGACCGGCGAATAA
Upstream 100 bases:
>100_bases GCCATCCTAGATCGGGAAAACACGGGAGCAAACGATCATTGAAGTTCGGAATATTATCGATAATAATGATAAAAACAAGC ATCGGAATCAGGAGCCGGAT
Downstream 100 bases:
>100_bases TGGCCGTTTCCAGCCTGTCGGCTTTCGGACTGAAAATGAAAGAAGCAGACATTGAGCTTCGCCAAAGCGTCGTCCTTGCG AAAACCGACATTGGTCTGTG
Product: beta-lactamase
Products: NA
Alternate protein names: Beta-Lactamase Class C; Hydrolase Transmembrane Protein; Beta-Lactamase Family Protein; 6-Aminohexanoate-Dimer Hydrolase
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MKRIAPLLLLAGCAAAPAVQAAPAPGCAAALAYSSAHQGVAVLVLEDGKVRCSSDGVSTPQELWSGTKSLVGLMAAAAVQ DRLLTLDEPASATLAEWREDPKKAAITIRQLLAMTSGQASTVGRPRGYLDSVNAPLAADPGTKFQYGPAPMQIIGEIIRR KLAAASLDADPRRYLERRILTPVGVTIGDWRNGPDGAPLMPQGLVLAAEQWAKVGEFVRRGGTQDGKALVDPAALAELFK GSDANPAYGLTWWLPRASPSDDPVTRSTDIVAHAPTLPADLVVAAGAGDQRLYVIPSRRLTIVRQARLDIAALAAGKKSG WSDTHFLSFFLSPTGE
Sequences:
>Translated_336_residues MKRIAPLLLLAGCAAAPAVQAAPAPGCAAALAYSSAHQGVAVLVLEDGKVRCSSDGVSTPQELWSGTKSLVGLMAAAAVQ DRLLTLDEPASATLAEWREDPKKAAITIRQLLAMTSGQASTVGRPRGYLDSVNAPLAADPGTKFQYGPAPMQIIGEIIRR KLAAASLDADPRRYLERRILTPVGVTIGDWRNGPDGAPLMPQGLVLAAEQWAKVGEFVRRGGTQDGKALVDPAALAELFK GSDANPAYGLTWWLPRASPSDDPVTRSTDIVAHAPTLPADLVVAAGAGDQRLYVIPSRRLTIVRQARLDIAALAAGKKSG WSDTHFLSFFLSPTGE >Mature_336_residues MKRIAPLLLLAGCAAAPAVQAAPAPGCAAALAYSSAHQGVAVLVLEDGKVRCSSDGVSTPQELWSGTKSLVGLMAAAAVQ DRLLTLDEPASATLAEWREDPKKAAITIRQLLAMTSGQASTVGRPRGYLDSVNAPLAADPGTKFQYGPAPMQIIGEIIRR KLAAASLDADPRRYLERRILTPVGVTIGDWRNGPDGAPLMPQGLVLAAEQWAKVGEFVRRGGTQDGKALVDPAALAELFK GSDANPAYGLTWWLPRASPSDDPVTRSTDIVAHAPTLPADLVVAAGAGDQRLYVIPSRRLTIVRQARLDIAALAAGKKSG WSDTHFLSFFLSPTGE
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35297; Mature: 35297
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIAPLLLLAGCAAAPAVQAAPAPGCAAALAYSSAHQGVAVLVLEDGKVRCSSDGVSTP CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCH QELWSGTKSLVGLMAAAAVQDRLLTLDEPASATLAEWREDPKKAAITIRQLLAMTSGQAS HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCC TVGRPRGYLDSVNAPLAADPGTKFQYGPAPMQIIGEIIRRKLAAASLDADPRRYLERRIL CCCCCCCCHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC TPVGVTIGDWRNGPDGAPLMPQGLVLAAEQWAKVGEFVRRGGTQDGKALVDPAALAELFK CCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC GSDANPAYGLTWWLPRASPSDDPVTRSTDIVAHAPTLPADLVVAAGAGDQRLYVIPSRRL CCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEECCCCE TIVRQARLDIAALAAGKKSGWSDTHFLSFFLSPTGE EHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC >Mature Secondary Structure MKRIAPLLLLAGCAAAPAVQAAPAPGCAAALAYSSAHQGVAVLVLEDGKVRCSSDGVSTP CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCH QELWSGTKSLVGLMAAAAVQDRLLTLDEPASATLAEWREDPKKAAITIRQLLAMTSGQAS HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCC TVGRPRGYLDSVNAPLAADPGTKFQYGPAPMQIIGEIIRRKLAAASLDADPRRYLERRIL CCCCCCCCHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC TPVGVTIGDWRNGPDGAPLMPQGLVLAAEQWAKVGEFVRRGGTQDGKALVDPAALAELFK CCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC GSDANPAYGLTWWLPRASPSDDPVTRSTDIVAHAPTLPADLVVAAGAGDQRLYVIPSRRL CCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEECCCCE TIVRQARLDIAALAAGKKSGWSDTHFLSFFLSPTGE EHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA