| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487975
Identifier: 103487975
GI number: 103487975
Start: 2635250
End: 2635759
Strand: Reverse
Name: 103487975
Synonym: Sala_2496
Alternate gene names: NA
Gene position: 2635759-2635250 (Counterclockwise)
Preceding gene: 103487976
Following gene: 103487974
Centisome position: 78.79
GC content: 68.63
Gene sequence:
>510_bases GTGGCGGCTTCTAGGAATAGTCCGCATTTCGATCTTGCCCGGTGGCCTCCGGCCATCGCCTCGCGCTCGGTGGGCGACGA GACGCATCTGGTGATGAGCGATGGTGTGTCCTTTCATCGGGTCTGCCTGCGTGACGCGGCCGCCGGACGCCCCCTTGCTT CGCTTATCCCGTGCGACGCGCTGCTCGATGTCCGCCTGCAGGCCCTCGCAGGCTTGGACCGATGGCTGCGCGGCGCGCGG AGCGCGGCGCAACCATTCGGCCCGACCGCCTATCAGGCGCGGCGTCTCCAACTCTTACTGGCCATCCTCAACCTTCGCCA AGACGGCGAGGTTACGAGCCATATGGTCGCGCAGCGCCTCGTCTATCCGCGCCTCTCGATCGGACAGGGCGCCGCCTGGA AGTCCTCTCCCGAGCGCCGCCGGACCCAGCGCCTTATCCACGAGGCCGACGCGCTTGCCGCGGGCGGCTATCGCACGCTG CTCGCCGGCCGCGCGGGGCGACAAAAATAG
Upstream 100 bases:
>100_bases GGCCTTTGCTTTCCCGGCCGATCCCCATCTGTCGGCGCTTGGAGCGCCTGCCTTCTGGGACCCGGCCGAGTGTCCTCAGG TCATAATCCTCGGCCCTGCA
Downstream 100 bases:
>100_bases CTCGGCGATTCAGCCGCTCCCCCGCGCTCCCGCTTTCGCGCCACGACGCCCCATCGCGCGCTGCCCCGCCTTTTCGGGAG CCGCCGCGGGAAGGAGCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MAASRNSPHFDLARWPPAIASRSVGDETHLVMSDGVSFHRVCLRDAAAGRPLASLIPCDALLDVRLQALAGLDRWLRGAR SAAQPFGPTAYQARRLQLLLAILNLRQDGEVTSHMVAQRLVYPRLSIGQGAAWKSSPERRRTQRLIHEADALAAGGYRTL LAGRAGRQK
Sequences:
>Translated_169_residues MAASRNSPHFDLARWPPAIASRSVGDETHLVMSDGVSFHRVCLRDAAAGRPLASLIPCDALLDVRLQALAGLDRWLRGAR SAAQPFGPTAYQARRLQLLLAILNLRQDGEVTSHMVAQRLVYPRLSIGQGAAWKSSPERRRTQRLIHEADALAAGGYRTL LAGRAGRQK >Mature_168_residues AASRNSPHFDLARWPPAIASRSVGDETHLVMSDGVSFHRVCLRDAAAGRPLASLIPCDALLDVRLQALAGLDRWLRGARS AAQPFGPTAYQARRLQLLLAILNLRQDGEVTSHMVAQRLVYPRLSIGQGAAWKSSPERRRTQRLIHEADALAAGGYRTLL AGRAGRQK
Specific function: Unknown
COG id: COG5419
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18466; Mature: 18335
Theoretical pI: Translated: 11.74; Mature: 11.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASRNSPHFDLARWPPAIASRSVGDETHLVMSDGVSFHRVCLRDAAAGRPLASLIPCDA CCCCCCCCCCCHHHCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHCHHH LLDVRLQALAGLDRWLRGARSAAQPFGPTAYQARRLQLLLAILNLRQDGEVTSHMVAQRL HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VYPRLSIGQGAAWKSSPERRRTQRLIHEADALAAGGYRTLLAGRAGRQK HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC >Mature Secondary Structure AASRNSPHFDLARWPPAIASRSVGDETHLVMSDGVSFHRVCLRDAAAGRPLASLIPCDA CCCCCCCCCCHHHCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHCHHH LLDVRLQALAGLDRWLRGARSAAQPFGPTAYQARRLQLLLAILNLRQDGEVTSHMVAQRL HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VYPRLSIGQGAAWKSSPERRRTQRLIHEADALAAGGYRTLLAGRAGRQK HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA