| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487974
Identifier: 103487974
GI number: 103487974
Start: 2634905
End: 2635147
Strand: Reverse
Name: 103487974
Synonym: Sala_2495
Alternate gene names: NA
Gene position: 2635147-2634905 (Counterclockwise)
Preceding gene: 103487975
Following gene: 103487973
Centisome position: 78.77
GC content: 70.78
Gene sequence:
>243_bases ATGACCCCCGCGCACCCTCCCCGTTATCTGAGGACCCCTGACGCGGCGCGCCGCGTCGGCCTCTCGCCGCGAACGCTCGA AAAGCATCGCTGCTATGGCACCGGCCCGGCCTATCGCAAACTCGGTGGGCGCGTGGTCTATGCGATCGACGAACTCGATG CATGGGTCGAACTCGGGCGGCGCTCGTCGACCTCCGATCCGGGCGTCGGCACCGTGCACCCGGCGCGCCGGGGGCTCGCC TGA
Upstream 100 bases:
>100_bases CGGCGATTCAGCCGCTCCCCCGCGCTCCCGCTTTCGCGCCACGACGCCCCATCGCGCGCTGCCCCGCCTTTTCGGGAGCC GCCGCGGGAAGGAGCATCCC
Downstream 100 bases:
>100_bases TGCCGCGCGCTGTCGCAGCGCCCGGCGTTTCGCTCTCCCGCCCCGGCCACGGTAGCGGATGTGTTTCCGCGTCGCCCCAC GGCTGCGGCTTGACTGAGGT
Product: putative transcriptional regulator
Products: NA
Alternate protein names: Phage Transcriptional Regulator AlpA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MTPAHPPRYLRTPDAARRVGLSPRTLEKHRCYGTGPAYRKLGGRVVYAIDELDAWVELGRRSSTSDPGVGTVHPARRGLA
Sequences:
>Translated_80_residues MTPAHPPRYLRTPDAARRVGLSPRTLEKHRCYGTGPAYRKLGGRVVYAIDELDAWVELGRRSSTSDPGVGTVHPARRGLA >Mature_79_residues TPAHPPRYLRTPDAARRVGLSPRTLEKHRCYGTGPAYRKLGGRVVYAIDELDAWVELGRRSSTSDPGVGTVHPARRGLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8795; Mature: 8664
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAHPPRYLRTPDAARRVGLSPRTLEKHRCYGTGPAYRKLGGRVVYAIDELDAWVELGR CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEHHHHHHHHHHCC RSSTSDPGVGTVHPARRGLA CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPAHPPRYLRTPDAARRVGLSPRTLEKHRCYGTGPAYRKLGGRVVYAIDELDAWVELGR CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEHHHHHHHHHHCC RSSTSDPGVGTVHPARRGLA CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA