Click here to switch to the map view.

The map label for this gene is traD [H]

Identifier: 103487969

GI number: 103487969

Start: 2630441

End: 2632330

Strand: Reverse

Name: traD [H]

Synonym: Sala_2490

Alternate gene names: 103487969

Gene position: 2632330-2630441 (Counterclockwise)

Preceding gene: 103487970

Following gene: 103487968

Centisome position: 78.69

GC content: 65.71

Gene sequence:

>1890_bases
ATGCGCGATCGGGACCAGCGTATCCATGCCGACGCGCTGCGGCGCCACTGGCGATCGAACCAGGTCCGGCGGTTCAAGCG
CCATGCGATCATCTTCGCGGCATCGATCGCGCTCGGCGGCCTGACGCTCCCCTATCTGATGCTGACGCCGACGACGATGC
AGGCGACCGGGACCTGGTATGTCGCGCGATTGAAGACGTGGATATCGAGCGGCACCGAAGCCGAACCGGGCGTCATGATC
AGCGGTGGAGGAGAGCGCTACGAGGCATCGGCTCGATTGGTCGCGGCGCATCCCTATTATCGCCGGTCGGCCGACACGGT
GATTGCCTTCTTCATACGAGGATGCTTGCTGGGGTTCATCGCCTGGCTGGCGGGCCTGATCTTGCTGCGCGGCGCGATGG
CACGGCGGCGCGAACTCATGCTTCGCGATCGCGTGATCGGGGGGACGATCGTTACGACCGAGAAGAAGCTCGCGCAGCTG
ACGCGTGCCGAAGCAGGGGACCATGCCCTGGCCATCGCGACGGTGCCCATGCCGCCACGCCTCGAAACCCGCCACATGGC
GATGGTCGGCACGACCGGAAGCGGAAAGACCACGGTGCTGCGTCAGATACTCGATGGCGTCGAGGCGCGCGGCGAGGCGG
CGCTCGTCTACGACACGAGCGGTGAGTTCGTCGCCCAATATTATGATCCCCGGCGCGGCGACATCATCCTAAATCCGTTC
GATGCGCGCTGCGCTATTTGGACGCCCTTCGCCGAGATTGCGCATCCGGCGGATGCCGACCGCATCGCGCAGCAGCTTAT
CACCGAGACCGGACAGCATGATCGCGACGTGTGGCTCGAAACGAGCCGCATCCTCGTCGCCAACATGATCCGCGCGCTGT
GGCGCGAGGGCAAATGCACCCTGCCCGATCTGCTCCATGCATTGCAGGTGCGGTCAAAGGACGATCTCAAGCTATGGCTG
GGGAACAGTTCGTCGGCGCGCACCTTCGCTGACGATGCCGACCGCGCGACGGGAAGCGTGCTCTTCATGCTCGCCAAGGC
CGCGAACCTCATCCAGTTCCTGCGCATCGACGAGGGCAAGGAGACGGCCTTTTCTTTCCGCGATTTTTTATCGGGGCTCG
ACATGCATCCCGGTCCGAAGCCCTGGATCTTCGTGCCGCGGAAAGAGGATTATTTCGAGGCCTCGAAGCCGCTGCTTGCC
TGCTGGCTCGAATGCGCCGCGAGCGCCCTGCTCGGGCATTCGCCCTCGGCCGAGCGCCGCCTCTGGTTCATCCTCGACGA
ACTCGCCGACCTGCCGCGCGTCGACAATCTCGCGCGGCTGCTACCCGAGGGGCGCAAGTTCGGGGCGGCGGTCATCCTCA
CCTTTCAGGCGATCGGGCAGATGCGACATCGCTACGGACAGGATTTGTCCGAATCGATGCTCGGCTGCTGCAACACCAAG
CTGTTCCTCCAGATGACCGACAGCGAATCCCGGCAATGGGCGAGCGACACCATCGGAAGCTGCGAGGTCGAGCTGCCGAC
GATGACCGATGCCCTCGCCGACGGCGACTACAAGCCGCGCACGACGCTCGGCCGCCAGCGCAAGGTCCGGCCCGCCGTCC
TCGAGAGCGAACTGCGCCTTCCCAGGCATCGCGGCTATTTGCTGTTCCCCGATGGATTGCCGGTCGCGCGCATCGCGCTC
ACCGACGACCATATCGTGCGGCGCGGCAAGGCGCGCCAGCTCGGATATGTCGCGGGCGATCCCACGACCAGCCTCTGGCA
GCAGTCCGTCGAAGCGCCGCCGGTCGGGACACCGCCGGTTGAAGCGGAGCCCGCCGTGCAACCATCGACGGTGCCGCCCA
CCGAGCCGGAGCCGCCGAAACCACAGCCGAGCGGCGACGGACCAGTCTGA

Upstream 100 bases:

>100_bases
GCGCCGCCTTCGACGGCGGCAAGAGCGACGAGGAGATAAGCGCCGAGATCGGCCGTGCCTATGATCGCCAGCGGCGCCGT
GCCGATGAGGGCGGGTCGTG

Downstream 100 bases:

>100_bases
TGGTCGCGTCGGTATCGGCGCTGACGAGTTCGGCGCAGGCGAGCAGCTATTATGAGGCCGACGATTATTATGCCGAGGGC
GGGCTGTCGCCGTCCGAATG

Product: Type IV secretory pathway VirD4 components-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 629

Protein sequence:

>629_residues
MRDRDQRIHADALRRHWRSNQVRRFKRHAIIFAASIALGGLTLPYLMLTPTTMQATGTWYVARLKTWISSGTEAEPGVMI
SGGGERYEASARLVAAHPYYRRSADTVIAFFIRGCLLGFIAWLAGLILLRGAMARRRELMLRDRVIGGTIVTTEKKLAQL
TRAEAGDHALAIATVPMPPRLETRHMAMVGTTGSGKTTVLRQILDGVEARGEAALVYDTSGEFVAQYYDPRRGDIILNPF
DARCAIWTPFAEIAHPADADRIAQQLITETGQHDRDVWLETSRILVANMIRALWREGKCTLPDLLHALQVRSKDDLKLWL
GNSSSARTFADDADRATGSVLFMLAKAANLIQFLRIDEGKETAFSFRDFLSGLDMHPGPKPWIFVPRKEDYFEASKPLLA
CWLECAASALLGHSPSAERRLWFILDELADLPRVDNLARLLPEGRKFGAAVILTFQAIGQMRHRYGQDLSESMLGCCNTK
LFLQMTDSESRQWASDTIGSCEVELPTMTDALADGDYKPRTTLGRQRKVRPAVLESELRLPRHRGYLLFPDGLPVARIAL
TDDHIVRRGKARQLGYVAGDPTTSLWQQSVEAPPVGTPPVEAEPAVQPSTVPPTEPEPPKPQPSGDGPV

Sequences:

>Translated_629_residues
MRDRDQRIHADALRRHWRSNQVRRFKRHAIIFAASIALGGLTLPYLMLTPTTMQATGTWYVARLKTWISSGTEAEPGVMI
SGGGERYEASARLVAAHPYYRRSADTVIAFFIRGCLLGFIAWLAGLILLRGAMARRRELMLRDRVIGGTIVTTEKKLAQL
TRAEAGDHALAIATVPMPPRLETRHMAMVGTTGSGKTTVLRQILDGVEARGEAALVYDTSGEFVAQYYDPRRGDIILNPF
DARCAIWTPFAEIAHPADADRIAQQLITETGQHDRDVWLETSRILVANMIRALWREGKCTLPDLLHALQVRSKDDLKLWL
GNSSSARTFADDADRATGSVLFMLAKAANLIQFLRIDEGKETAFSFRDFLSGLDMHPGPKPWIFVPRKEDYFEASKPLLA
CWLECAASALLGHSPSAERRLWFILDELADLPRVDNLARLLPEGRKFGAAVILTFQAIGQMRHRYGQDLSESMLGCCNTK
LFLQMTDSESRQWASDTIGSCEVELPTMTDALADGDYKPRTTLGRQRKVRPAVLESELRLPRHRGYLLFPDGLPVARIAL
TDDHIVRRGKARQLGYVAGDPTTSLWQQSVEAPPVGTPPVEAEPAVQPSTVPPTEPEPPKPQPSGDGPV
>Mature_629_residues
MRDRDQRIHADALRRHWRSNQVRRFKRHAIIFAASIALGGLTLPYLMLTPTTMQATGTWYVARLKTWISSGTEAEPGVMI
SGGGERYEASARLVAAHPYYRRSADTVIAFFIRGCLLGFIAWLAGLILLRGAMARRRELMLRDRVIGGTIVTTEKKLAQL
TRAEAGDHALAIATVPMPPRLETRHMAMVGTTGSGKTTVLRQILDGVEARGEAALVYDTSGEFVAQYYDPRRGDIILNPF
DARCAIWTPFAEIAHPADADRIAQQLITETGQHDRDVWLETSRILVANMIRALWREGKCTLPDLLHALQVRSKDDLKLWL
GNSSSARTFADDADRATGSVLFMLAKAANLIQFLRIDEGKETAFSFRDFLSGLDMHPGPKPWIFVPRKEDYFEASKPLLA
CWLECAASALLGHSPSAERRLWFILDELADLPRVDNLARLLPEGRKFGAAVILTFQAIGQMRHRYGQDLSESMLGCCNTK
LFLQMTDSESRQWASDTIGSCEVELPTMTDALADGDYKPRTTLGRQRKVRPAVLESELRLPRHRGYLLFPDGLPVARIAL
TDDHIVRRGKARQLGYVAGDPTTSLWQQSVEAPPVGTPPVEAEPAVQPSTVPPTEPEPPKPQPSGDGPV

Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energize DNA transport [H]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To traD of plasmid IncFII R100 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014128
- InterPro:   IPR019476
- InterPro:   IPR022585 [H]

Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]

EC number: NA

Molecular weight: Translated: 69858; Mature: 69858

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRDQRIHADALRRHWRSNQVRRFKRHAIIFAASIALGGLTLPYLMLTPTTMQATGTWY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCHHHCHHEECCCEEECCCCHH
VARLKTWISSGTEAEPGVMISGGGERYEASARLVAAHPYYRRSADTVIAFFIRGCLLGFI
HHHHHHHHCCCCCCCCCEEEECCCCEEECCCEEEEECCHHHCCHHHHHHHHHHHHHHHHH
AWLAGLILLRGAMARRRELMLRDRVIGGTIVTTEKKLAQLTRAEAGDHALAIATVPMPPR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCEEEEEECCCCCC
LETRHMAMVGTTGSGKTTVLRQILDGVEARGEAALVYDTSGEFVAQYYDPRRGDIILNPF
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCEEECCC
DARCAIWTPFAEIAHPADADRIAQQLITETGQHDRDVWLETSRILVANMIRALWREGKCT
CCCEEEECCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
LPDLLHALQVRSKDDLKLWLGNSSSARTFADDADRATGSVLFMLAKAANLIQFLRIDEGK
HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ETAFSFRDFLSGLDMHPGPKPWIFVPRKEDYFEASKPLLACWLECAASALLGHSPSAERR
HHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHH
LWFILDELADLPRVDNLARLLPEGRKFGAAVILTFQAIGQMRHRYGQDLSESMLGCCNTK
HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCE
LFLQMTDSESRQWASDTIGSCEVELPTMTDALADGDYKPRTTLGRQRKVRPAVLESELRL
EEEEECCCCCHHHHHCCCCCEEEECCCHHHHHCCCCCCCCHHCCCHHCCCHHHHHHHHCC
PRHRGYLLFPDGLPVARIALTDDHIVRRGKARQLGYVAGDPTTSLWQQSVEAPPVGTPPV
HHHCCEEECCCCCCEEEEEECCHHHHHCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCC
EAEPAVQPSTVPPTEPEPPKPQPSGDGPV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDRDQRIHADALRRHWRSNQVRRFKRHAIIFAASIALGGLTLPYLMLTPTTMQATGTWY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCHHHCHHEECCCEEECCCCHH
VARLKTWISSGTEAEPGVMISGGGERYEASARLVAAHPYYRRSADTVIAFFIRGCLLGFI
HHHHHHHHCCCCCCCCCEEEECCCCEEECCCEEEEECCHHHCCHHHHHHHHHHHHHHHHH
AWLAGLILLRGAMARRRELMLRDRVIGGTIVTTEKKLAQLTRAEAGDHALAIATVPMPPR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCEEEEEECCCCCC
LETRHMAMVGTTGSGKTTVLRQILDGVEARGEAALVYDTSGEFVAQYYDPRRGDIILNPF
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCEEECCC
DARCAIWTPFAEIAHPADADRIAQQLITETGQHDRDVWLETSRILVANMIRALWREGKCT
CCCEEEECCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
LPDLLHALQVRSKDDLKLWLGNSSSARTFADDADRATGSVLFMLAKAANLIQFLRIDEGK
HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ETAFSFRDFLSGLDMHPGPKPWIFVPRKEDYFEASKPLLACWLECAASALLGHSPSAERR
HHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHH
LWFILDELADLPRVDNLARLLPEGRKFGAAVILTFQAIGQMRHRYGQDLSESMLGCCNTK
HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCE
LFLQMTDSESRQWASDTIGSCEVELPTMTDALADGDYKPRTTLGRQRKVRPAVLESELRL
EEEEECCCCCHHHHHCCCCCEEEECCCHHHHHCCCCCCCCHHCCCHHCCCHHHHHHHHCC
PRHRGYLLFPDGLPVARIALTDDHIVRRGKARQLGYVAGDPTTSLWQQSVEAPPVGTPPV
HHHCCEEECCCCCCEEEEEECCHHHHHCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCC
EAEPAVQPSTVPPTEPEPPKPQPSGDGPV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2680768; 7915817; 10464182; 3323526; 2164585; 2163400; 1618779; 10498725 [H]