| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487970
Identifier: 103487970
GI number: 103487970
Start: 2632330
End: 2632827
Strand: Reverse
Name: 103487970
Synonym: Sala_2491
Alternate gene names: NA
Gene position: 2632827-2632330 (Counterclockwise)
Preceding gene: 103487971
Following gene: 103487969
Centisome position: 78.71
GC content: 65.26
Gene sequence:
>498_bases GTGCATCCAGCTTTTGTCCCACTTTTCGAGCGGCGGATCCGACGTCACGTCGGCTGGCCTAGGCAGAAGCTTAGGAATTC CGCAACTTTTGGAGACGTCGCATCGGCGTCGCGATCGGGCCTCGCGATGAAGCTGGTGAGGCATACGGTTCGTCTGCCGG TCGAGGTCGACAAGGCGGTAGGCGAGCTTGCGAAGGCGAAAGGCGACACCGCCTATGCGACCCTCGCGACCTGCGTCGAA GCCGGGCTTGCGGCGCTGTCAAATCCTATGGCGGACGGGTCCGGCAATCGCGAACTCGTCGCCGAACTCGTCTCGATCGG TACCCGGCTGCTCGCCGTCGAGCGCATGCTGGACCGCACCCTGTTCACTGCCTGCGCTGCCTATTGCTACGCGCGCAGCG CCGCCTTCGACGGCGGCAAGAGCGACGAGGAGATAAGCGCCGAGATCGGCCGTGCCTATGATCGCCAGCGGCGCCGTGCC GATGAGGGCGGGTCGTGA
Upstream 100 bases:
>100_bases GAGCCCGGCTCAAGTCTGAAGCCATAGTCTTTCAGGCAAAGAAGTTGGGCCGCGATGCTACGCATCGGACCCATAATTTG AATACACACCTCACGCACGG
Downstream 100 bases:
>100_bases TGCGCGATCGGGACCAGCGTATCCATGCCGACGCGCTGCGGCGCCACTGGCGATCGAACCAGGTCCGGCGGTTCAAGCGC CATGCGATCATCTTCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MHPAFVPLFERRIRRHVGWPRQKLRNSATFGDVASASRSGLAMKLVRHTVRLPVEVDKAVGELAKAKGDTAYATLATCVE AGLAALSNPMADGSGNRELVAELVSIGTRLLAVERMLDRTLFTACAAYCYARSAAFDGGKSDEEISAEIGRAYDRQRRRA DEGGS
Sequences:
>Translated_165_residues MHPAFVPLFERRIRRHVGWPRQKLRNSATFGDVASASRSGLAMKLVRHTVRLPVEVDKAVGELAKAKGDTAYATLATCVE AGLAALSNPMADGSGNRELVAELVSIGTRLLAVERMLDRTLFTACAAYCYARSAAFDGGKSDEEISAEIGRAYDRQRRRA DEGGS >Mature_165_residues MHPAFVPLFERRIRRHVGWPRQKLRNSATFGDVASASRSGLAMKLVRHTVRLPVEVDKAVGELAKAKGDTAYATLATCVE AGLAALSNPMADGSGNRELVAELVSIGTRLLAVERMLDRTLFTACAAYCYARSAAFDGGKSDEEISAEIGRAYDRQRRRA DEGGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17869; Mature: 17869
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPAFVPLFERRIRRHVGWPRQKLRNSATFGDVASASRSGLAMKLVRHTVRLPVEVDKAV CCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH GELAKAKGDTAYATLATCVEAGLAALSNPMADGSGNRELVAELVSIGTRLLAVERMLDRT HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LFTACAAYCYARSAAFDGGKSDEEISAEIGRAYDRQRRRADEGGS HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MHPAFVPLFERRIRRHVGWPRQKLRNSATFGDVASASRSGLAMKLVRHTVRLPVEVDKAV CCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH GELAKAKGDTAYATLATCVEAGLAALSNPMADGSGNRELVAELVSIGTRLLAVERMLDRT HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LFTACAAYCYARSAAFDGGKSDEEISAEIGRAYDRQRRRADEGGS HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA