| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487965
Identifier: 103487965
GI number: 103487965
Start: 2625126
End: 2625701
Strand: Direct
Name: 103487965
Synonym: Sala_2486
Alternate gene names: NA
Gene position: 2625126-2625701 (Clockwise)
Preceding gene: 103487940
Following gene: 103487966
Centisome position: 78.48
GC content: 64.41
Gene sequence:
>576_bases GTGCCGGCGATCTCGAGAACCGGACCAGCCCGAAACGCGGGCGCGACAACTTGCGTCGCGCGCGATTATGACAAGAGTGT AACAATGACTGATTCGGGGTCGCAGCCGTCGGACGAGCCTTTGCGCTGGGCGCGTCTCACCGGGAAACAGCGCGCATGTC TCGATTTGCTGCTCGAGCGCCAGACCTCGAAACAGATCGCGCGCCGCCTCCAAATATCGAAGCAGGCAGTCGATCTGAGG ATCACCACTGCCCGGCATATCCTCGGCGCCGCCAATCGCGACGAGGCCGCACTCATCTACGCCCGGCTGCGCCAGACCTA CGACCGGATACCATGTGATCCGGTCGTACTACCGCCGGGCACTGACCTCGTGCCATCCGATTTCCCGGACGGCGAGCCGG CCCCGCTGGCGCTGAACGACATCGTGGCCGACCCGCCGTCCAAGGGTCTCTGGAGGCACGATCATCGTCGCTTGAACCGG GGCGGGATCATGGCGGCGATGCTGGCCGTCCTCGTCATTCTCGTTCTTGCGGCGGTGACGATCGGTGAAACACTGACGCG CCTCCTTTCCGGGTGA
Upstream 100 bases:
>100_bases CCCGCTCGACGGGGATGAGTAAGAGACGCAGCAAAGCGCCGGATTCAACAAGCTTTTCGCCGCGTCGCAGCGTGGCGATG AAAGACAGGCGATGGCGTAA
Downstream 100 bases:
>100_bases CCCTTTCGCACAGTCGATCAGCAATGGCCGGAGCACTGGCTTCCGGCAGAGGAGAAGTCATGTCCAACGAAATCACCATC ACGGCCGCACGTCTCATCCG
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MPAISRTGPARNAGATTCVARDYDKSVTMTDSGSQPSDEPLRWARLTGKQRACLDLLLERQTSKQIARRLQISKQAVDLR ITTARHILGAANRDEAALIYARLRQTYDRIPCDPVVLPPGTDLVPSDFPDGEPAPLALNDIVADPPSKGLWRHDHRRLNR GGIMAAMLAVLVILVLAAVTIGETLTRLLSG
Sequences:
>Translated_191_residues MPAISRTGPARNAGATTCVARDYDKSVTMTDSGSQPSDEPLRWARLTGKQRACLDLLLERQTSKQIARRLQISKQAVDLR ITTARHILGAANRDEAALIYARLRQTYDRIPCDPVVLPPGTDLVPSDFPDGEPAPLALNDIVADPPSKGLWRHDHRRLNR GGIMAAMLAVLVILVLAAVTIGETLTRLLSG >Mature_190_residues PAISRTGPARNAGATTCVARDYDKSVTMTDSGSQPSDEPLRWARLTGKQRACLDLLLERQTSKQIARRLQISKQAVDLRI TTARHILGAANRDEAALIYARLRQTYDRIPCDPVVLPPGTDLVPSDFPDGEPAPLALNDIVADPPSKGLWRHDHRRLNRG GIMAAMLAVLVILVLAAVTIGETLTRLLSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20779; Mature: 20648
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAISRTGPARNAGATTCVARDYDKSVTMTDSGSQPSDEPLRWARLTGKQRACLDLLLER CCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHH QTSKQIARRLQISKQAVDLRITTARHILGAANRDEAALIYARLRQTYDRIPCDPVVLPPG HHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC TDLVPSDFPDGEPAPLALNDIVADPPSKGLWRHDHRRLNRGGIMAAMLAVLVILVLAAVT CCCCCCCCCCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IGETLTRLLSG HHHHHHHHHCC >Mature Secondary Structure PAISRTGPARNAGATTCVARDYDKSVTMTDSGSQPSDEPLRWARLTGKQRACLDLLLER CCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHH QTSKQIARRLQISKQAVDLRITTARHILGAANRDEAALIYARLRQTYDRIPCDPVVLPPG HHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC TDLVPSDFPDGEPAPLALNDIVADPPSKGLWRHDHRRLNRGGIMAAMLAVLVILVLAAVT CCCCCCCCCCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IGETLTRLLSG HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA