| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487948
Identifier: 103487948
GI number: 103487948
Start: 2609538
End: 2609897
Strand: Reverse
Name: 103487948
Synonym: Sala_2469
Alternate gene names: NA
Gene position: 2609897-2609538 (Counterclockwise)
Preceding gene: 103487949
Following gene: 103487947
Centisome position: 78.02
GC content: 63.06
Gene sequence:
>360_bases ATGACAAACCGAAAAATCGACCTGAAATGGGCTGGATATGGTGTCGCGCTCGCAGCGGCACTCGCGCTCGCCGGCTGTGG AGACAAGGCCGAGAACAAGGCCGCGGACGCCGCCTCGGCAACCCCCGACGCAACCGCCGGTGGCGCTGGTTCCACGCCGT CCACCGATGCCTCATCCGCCGCGCCAGCCGCGCCCGATGCCATGGATCATGAAGATGACGCGATGGACGAGGAAATGATG CGCCATCATCGTCAGGAAATGGACCATGACGAGATGCGCAAGGGTGGGGCGGGGCAAGGCAATATGCAGCCCGCGGATCA GACCACGACCGATCAGTCGGCGCCGATGAAGCATATGTAA
Upstream 100 bases:
>100_bases CCTGTCGCACGGCCGCTGCCAGCGGATTCTGCGCGACGCGAAATGACTTTGTCCGGGTGGCCGATGGCCACCCGGACTAG TTCGAGGAAGGGATAATGCC
Downstream 100 bases:
>100_bases GCAGATTCGCCGGGCGGGGTGACCAAAGATGCAGAAATCATTCCGCTTCGGCCTGTGCGTGGCGATGACGTTTCTGACGG CATCGATCGTCCATGCGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MTNRKIDLKWAGYGVALAAALALAGCGDKAENKAADAASATPDATAGGAGSTPSTDASSAAPAAPDAMDHEDDAMDEEMM RHHRQEMDHDEMRKGGAGQGNMQPADQTTTDQSAPMKHM
Sequences:
>Translated_119_residues MTNRKIDLKWAGYGVALAAALALAGCGDKAENKAADAASATPDATAGGAGSTPSTDASSAAPAAPDAMDHEDDAMDEEMM RHHRQEMDHDEMRKGGAGQGNMQPADQTTTDQSAPMKHM >Mature_118_residues TNRKIDLKWAGYGVALAAALALAGCGDKAENKAADAASATPDATAGGAGSTPSTDASSAAPAAPDAMDHEDDAMDEEMMR HHRQEMDHDEMRKGGAGQGNMQPADQTTTDQSAPMKHM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12286; Mature: 12154
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 8.4 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 7.6 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRKIDLKWAGYGVALAAALALAGCGDKAENKAADAASATPDATAGGAGSTPSTDASSA CCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC APAAPDAMDHEDDAMDEEMMRHHRQEMDHDEMRKGGAGQGNMQPADQTTTDQSAPMKHM CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TNRKIDLKWAGYGVALAAALALAGCGDKAENKAADAASATPDATAGGAGSTPSTDASSA CCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC APAAPDAMDHEDDAMDEEMMRHHRQEMDHDEMRKGGAGQGNMQPADQTTTDQSAPMKHM CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA