| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487945
Identifier: 103487945
GI number: 103487945
Start: 2606197
End: 2606910
Strand: Reverse
Name: 103487945
Synonym: Sala_2466
Alternate gene names: NA
Gene position: 2606910-2606197 (Counterclockwise)
Preceding gene: 103487946
Following gene: 103487944
Centisome position: 77.93
GC content: 64.57
Gene sequence:
>714_bases ATGATGCGCCACTGGCTGCTTCCGGCCCTTTTTGCGACCAGCCTGCTCGTCGTGCTGCTTGGGCTACCGGCGCTGTCGCG GTCGAACGCGCCGCCTCAGGCCGGCGTGGTCGCGCAGCTCGTTTCGCCGGGCCCCCTGTCCGAAGCCCACCGCAGCCTCG CAGGATCGTGCCGAAACTGCCACACCCCCATCGCTGGTGTGACGGGGGAGACTTGCAAGAGTTGTCATGCCGCGACCGAC TTCGGAAACAAGCAATCGACCCAATTCCATGCCTCGGCCTTGCAATGCACCTCATGCCACGTCGAGCATGCGGGCAGACA GAGCCTCATTCGCATGGATCACAAGGCCCTGTTCAAGCCGGGAATATGGTCGCAGCGCCCCGCCGCCGCGACCGCCGGCG GCGCGGTGACAGGCGTGCTCGCCTGTGCTGGTTGCCATTCCATTCGCGACCCGCACCTGGGCCTCTTCGGAACGCGCTGC GCGAGTTGCCACGCGACCGACAGCTGGCGCATCGACGGCTACCGGCATCCCTCGACCAATTCCCGGAACTGCTCCGAATG CCACCGGGCGCCGCCGAGCCACTATATGGAGCATTTCAGCATGGTTTCGCAGCGCGCCGCAGGCGAGCGGGCGACCGTGG AACAATGCTATGCCTGTCACACGACCGACAGTTTCAACAATATTCGCAGGAGAGGCTGGTATGATCACCATTGA
Upstream 100 bases:
>100_bases TCGCACGCTGGCGATGGTTTCATATCGTGGCCGGTTCGCTGCTTTACGCGCTCGTGATTCTCCATATCGCGGCCGCGGTC TATTTTGGTCTTCGCTGGCC
Downstream 100 bases:
>100_bases CGGCGGAAGCGGTCACTGGCTCGAGAGCCTGTTCCGCCTCGCCGTGGTTATCCTGGAACTGAGCGGCACGGCAACCATCC TGACAGGTGCCGCGCTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MMRHWLLPALFATSLLVVLLGLPALSRSNAPPQAGVVAQLVSPGPLSEAHRSLAGSCRNCHTPIAGVTGETCKSCHAATD FGNKQSTQFHASALQCTSCHVEHAGRQSLIRMDHKALFKPGIWSQRPAAATAGGAVTGVLACAGCHSIRDPHLGLFGTRC ASCHATDSWRIDGYRHPSTNSRNCSECHRAPPSHYMEHFSMVSQRAAGERATVEQCYACHTTDSFNNIRRRGWYDHH
Sequences:
>Translated_237_residues MMRHWLLPALFATSLLVVLLGLPALSRSNAPPQAGVVAQLVSPGPLSEAHRSLAGSCRNCHTPIAGVTGETCKSCHAATD FGNKQSTQFHASALQCTSCHVEHAGRQSLIRMDHKALFKPGIWSQRPAAATAGGAVTGVLACAGCHSIRDPHLGLFGTRC ASCHATDSWRIDGYRHPSTNSRNCSECHRAPPSHYMEHFSMVSQRAAGERATVEQCYACHTTDSFNNIRRRGWYDHH >Mature_237_residues MMRHWLLPALFATSLLVVLLGLPALSRSNAPPQAGVVAQLVSPGPLSEAHRSLAGSCRNCHTPIAGVTGETCKSCHAATD FGNKQSTQFHASALQCTSCHVEHAGRQSLIRMDHKALFKPGIWSQRPAAATAGGAVTGVLACAGCHSIRDPHLGLFGTRC ASCHATDSWRIDGYRHPSTNSRNCSECHRAPPSHYMEHFSMVSQRAAGERATVEQCYACHTTDSFNNIRRRGWYDHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25676; Mature: 25676
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 5.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRHWLLPALFATSLLVVLLGLPALSRSNAPPQAGVVAQLVSPGPLSEAHRSLAGSCRNC CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC HTPIAGVTGETCKSCHAATDFGNKQSTQFHASALQCTSCHVEHAGRQSLIRMDHKALFKP CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GIWSQRPAAATAGGAVTGVLACAGCHSIRDPHLGLFGTRCASCHATDSWRIDGYRHPSTN CCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEECCCCC SRNCSECHRAPPSHYMEHFSMVSQRAAGERATVEQCYACHTTDSFNNIRRRGWYDHH CCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCC >Mature Secondary Structure MMRHWLLPALFATSLLVVLLGLPALSRSNAPPQAGVVAQLVSPGPLSEAHRSLAGSCRNC CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC HTPIAGVTGETCKSCHAATDFGNKQSTQFHASALQCTSCHVEHAGRQSLIRMDHKALFKP CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GIWSQRPAAATAGGAVTGVLACAGCHSIRDPHLGLFGTRCASCHATDSWRIDGYRHPSTN CCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEECCCCC SRNCSECHRAPPSHYMEHFSMVSQRAAGERATVEQCYACHTTDSFNNIRRRGWYDHH CCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA