| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is zitB [C]
Identifier: 103487923
GI number: 103487923
Start: 2582648
End: 2583385
Strand: Direct
Name: zitB [C]
Synonym: Sala_2444
Alternate gene names: 103487923
Gene position: 2582648-2583385 (Clockwise)
Preceding gene: 103487921
Following gene: 103487924
Centisome position: 77.21
GC content: 65.31
Gene sequence:
>738_bases ATGTATAGGCGGTCCTCGTCCGAAGTTGAAGGCGGCAAAGCGAAGAGCGCGCCACCACCATGGAGTGAAGACGCGATGGC GGAGGGATCCGAGAACGGCGACGGCTGCGGCTGCACGGGAGACCCGGTGCGCGCGGAAAAGGACCCGGCCTATCGCCGTG CTCTTTGGATCGTGGTTATCCTAAATCTCGGCTTCGGCGCTATCGAGATCGTCGGCGGATTCATCGCCAACAGCCAGGCG CTGAAGGCCGACTCGCTCGACTTCATCGGCGACGGCACCATCACGCTGGCCGGCCTCGTCGCGATCGGCTGGACGGCGCT CGCCCGCACCCGCATCGCTCTTGCCCAAGGCCTGTTCCTGCTGACGCTCGGGCTCGGCGTCATCGGCGTCGCGCTGTGGC GCGCCCTGACAGCGGTTCCGCCCGAAGCCGAGCTCATGGGCGGCATCGGCTTCGTTGCACTGCTCGTCAATCTCACCTCG GCGGCGGTCCTCTCGCGGTTTCGCGAAGGCGACGCCAATGTCCGCGCTGTTTGGCTGTTCAGCCGCAATGACGCGGTCGC CAATGTCGCGGTAATCATCGCTGCGGGTCTCGTCGCATGGACCGGCCAGGCCTGGCCCGACCTTGCAGTGGCCGCCATCA TTGCAGCGCTCTTCCTGCATTCGGCCTATGAAATTCTTCGCAGCGCGCGGACCGAGCTGCGCCAACTGTCGGAACAAGGG ATTCGTGGTCAGGCTTGA
Upstream 100 bases:
>100_bases TAGAAGCGGATGGTGTTGACCTTGGTCCCGGTCTCCCGGGCAAGGTCGCCGATCGCGAGCCGCTTGGTCATATTATGCTT GATCCTCCAGTGACTGGAGG
Downstream 100 bases:
>100_bases CCCTGTAGTTGCTACAGGGTGCATAAGGCCGGCGAATCGACGCAAAGGGAAATGTCGCGAGCATGCTGGATCGACGTCAA GCTGCCGGCCTGATCGCCGC
Product: cation efflux protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Cation Efflux Permease; Heavy Metal Detoxification Protein; Cation Diffusion Facilitator; Transmembrane Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND OM Export Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Cation Efflux System Permease; Cation Diffusion Facilitator Family Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MYRRSSSEVEGGKAKSAPPPWSEDAMAEGSENGDGCGCTGDPVRAEKDPAYRRALWIVVILNLGFGAIEIVGGFIANSQA LKADSLDFIGDGTITLAGLVAIGWTALARTRIALAQGLFLLTLGLGVIGVALWRALTAVPPEAELMGGIGFVALLVNLTS AAVLSRFREGDANVRAVWLFSRNDAVANVAVIIAAGLVAWTGQAWPDLAVAAIIAALFLHSAYEILRSARTELRQLSEQG IRGQA
Sequences:
>Translated_245_residues MYRRSSSEVEGGKAKSAPPPWSEDAMAEGSENGDGCGCTGDPVRAEKDPAYRRALWIVVILNLGFGAIEIVGGFIANSQA LKADSLDFIGDGTITLAGLVAIGWTALARTRIALAQGLFLLTLGLGVIGVALWRALTAVPPEAELMGGIGFVALLVNLTS AAVLSRFREGDANVRAVWLFSRNDAVANVAVIIAAGLVAWTGQAWPDLAVAAIIAALFLHSAYEILRSARTELRQLSEQG IRGQA >Mature_245_residues MYRRSSSEVEGGKAKSAPPPWSEDAMAEGSENGDGCGCTGDPVRAEKDPAYRRALWIVVILNLGFGAIEIVGGFIANSQA LKADSLDFIGDGTITLAGLVAIGWTALARTRIALAQGLFLLTLGLGVIGVALWRALTAVPPEAELMGGIGFVALLVNLTS AAVLSRFREGDANVRAVWLFSRNDAVANVAVIIAAGLVAWTGQAWPDLAVAAIIAALFLHSAYEILRSARTELRQLSEQG IRGQA
Specific function: Involved In Zinc Efflux Across The Cytoplasmic Membrane, Thus Reducing Zinc Accumulation In The Cytoplasm And Rendering Bacteria More Resistant To Zinc. It May Contribute To Zinc Homeostasis At Low Concentrations Of Zinc, Whereas Znta Is Required For Grow
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25685; Mature: 25685
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRRSSSEVEGGKAKSAPPPWSEDAMAEGSENGDGCGCTGDPVRAEKDPAYRRALWIVVI CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LNLGFGAIEIVGGFIANSQALKADSLDFIGDGTITLAGLVAIGWTALARTRIALAQGLFL HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLGLGVIGVALWRALTAVPPEAELMGGIGFVALLVNLTSAAVLSRFREGDANVRAVWLF HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE SRNDAVANVAVIIAAGLVAWTGQAWPDLAVAAIIAALFLHSAYEILRSARTELRQLSEQG ECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IRGQA CCCCC >Mature Secondary Structure MYRRSSSEVEGGKAKSAPPPWSEDAMAEGSENGDGCGCTGDPVRAEKDPAYRRALWIVVI CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LNLGFGAIEIVGGFIANSQALKADSLDFIGDGTITLAGLVAIGWTALARTRIALAQGLFL HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLGLGVIGVALWRALTAVPPEAELMGGIGFVALLVNLTSAAVLSRFREGDANVRAVWLF HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE SRNDAVANVAVIIAAGLVAWTGQAWPDLAVAAIIAALFLHSAYEILRSARTELRQLSEQG ECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IRGQA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA