Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is ylcC [C]

Identifier: 103487921

GI number: 103487921

Start: 2581742

End: 2582110

Strand: Direct

Name: ylcC [C]

Synonym: Sala_2442

Alternate gene names: 103487921

Gene position: 2581742-2582110 (Clockwise)

Preceding gene: 103487920

Following gene: 103487923

Centisome position: 77.18

GC content: 62.87

Gene sequence:

>369_bases
ATGAAGAATTTGACCGCCATCGCACTGGGCATCGCGCTCAGCGCAGGACTTGCCGGCTGCGGCAAGCAGGGCGAAGCGCC
GAAGACCGAAGAAAAGGCCGCGATGGCCGATGACGCCGGAACCATGGCGATGCCCGCCGAAACCAAACATGGCAAGGGCA
CGGCGACCGTGACCGCAATCGATAGCGCGAAGGGACAGGTCACGCTCGATCATGGCGCGATCGCCGAACTCGAATGGCCG
CCGATGACGATGGGCTTCGCCGCAAAGCCCGAGCTGCTGAAGGACATCAAGGTCGGCGACAAGGTCGCGTTCGAGCTCGA
CTGGAACGGTAAGGCCGGGACGATCACCAAGCTCGACAAGGCGCCATAA

Upstream 100 bases:

>100_bases
TGCTGACCGCGCCGCTGCTCTCGATGCTCATCATTCCCGCCGCCTATCTGCTGATGCGCAGGCGCGCGGCCCATCCCGTT
CAACCCGAAGGAGAAATGAC

Downstream 100 bases:

>100_bases
TATCCGCCGGCGCGCGCGGCGAAGCCAGTCGTCGCGCGCGCCAGCCCCTTCCTTCCCCGAACCCGGATGCGTCCGGTCGG
ATCGATCAATCGGTCTGGAG

Product: putative copper efflux system periplasmic protein CusF

Products: NA

Alternate protein names: Copper Efflux System Periplasmic Protein

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKNLTAIALGIALSAGLAGCGKQGEAPKTEEKAAMADDAGTMAMPAETKHGKGTATVTAIDSAKGQVTLDHGAIAELEWP
PMTMGFAAKPELLKDIKVGDKVAFELDWNGKAGTITKLDKAP

Sequences:

>Translated_122_residues
MKNLTAIALGIALSAGLAGCGKQGEAPKTEEKAAMADDAGTMAMPAETKHGKGTATVTAIDSAKGQVTLDHGAIAELEWP
PMTMGFAAKPELLKDIKVGDKVAFELDWNGKAGTITKLDKAP
>Mature_122_residues
MKNLTAIALGIALSAGLAGCGKQGEAPKTEEKAAMADDAGTMAMPAETKHGKGTATVTAIDSAKGQVTLDHGAIAELEWP
PMTMGFAAKPELLKDIKVGDKVAFELDWNGKAGTITKLDKAP

Specific function: Unknown

COG id: COG5569

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12521; Mature: 12521

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLTAIALGIALSAGLAGCGKQGEAPKTEEKAAMADDAGTMAMPAETKHGKGTATVTAI
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCEEEEEEE
DSAKGQVTLDHGAIAELEWPPMTMGFAAKPELLKDIKVGDKVAFELDWNGKAGTITKLDK
CCCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEECCC
AP
CC
>Mature Secondary Structure
MKNLTAIALGIALSAGLAGCGKQGEAPKTEEKAAMADDAGTMAMPAETKHGKGTATVTAI
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCEEEEEEE
DSAKGQVTLDHGAIAELEWPPMTMGFAAKPELLKDIKVGDKVAFELDWNGKAGTITKLDK
CCCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEECCC
AP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA