| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487918
Identifier: 103487918
GI number: 103487918
Start: 2576165
End: 2577391
Strand: Direct
Name: 103487918
Synonym: Sala_2439
Alternate gene names: NA
Gene position: 2576165-2577391 (Clockwise)
Preceding gene: 103487917
Following gene: 103487919
Centisome position: 77.01
GC content: 68.54
Gene sequence:
>1227_bases ATGCGCCCATATTTTACGGCAGCCTTGCTTGCGCTGCCCTCGGCTCTTCACGCCGAGCCGATGACGCTCGATTCGGCGCT CAGCCGAGCAGCATCGGAGGCACCCGAACTGCAAAGCCGCGAAGCGGGCGTCGACGCCGCCCAATCGGCGGCGATCGCCG CCGACCGGCTGCCCGACCCGAAACTCAATATCGTCCTCCAGGATTTCCCGGTGACCGGACCCGACGCGGGCCGGTTCAAT CGCGACGATTTCACGATGCAGGTCATCGGCGTCAGCCAGGATTTTCCGAACCCCGCCAAACGCCGCGCGCGCGCGACCCG CGCGCAGGCCGACATTGGAATCGCCCGCGCCGACGAAGCGGTCACCGCGCAGGACATCAGGCTCGCGACCGCGCTCGCCT GGGTCGATCTCTATTATGCCAAGAAGGAGCTGAAGGAACTCGACCTGCTCGATAGCGGCCTCGAGGACCTTCAATCGACC GTGACGGCGCGGCTTGCCAGCGGTGCGGCGCGCCCGGCGCAGGCGCTCGAACCCGATCAGCTTCGCGCCGCGATCAACGA TCGCCGCAGCGCGCTCGCCGCCGAGATCGCCCGCGCCCGCGCGCAGCTCGCCCGCTTCACCGGCGACCCCGCCGCCGACA CGCTCGGCGACTTGCCGCCGCAGTCGATCGACGAACAAGGATTGCGCGCCGGCATCGACGCCCTGCCAAAGCTCAGAGCA CTCGATGCCCGCGCCCTCGCCGCCGACGCCGAGACCGGTCTCGCACGCGCCGACAAGCGACCCGACTGGAGCGTCAACGC GGCCTATGGGCGCCGCGAGCCCAATTACGGTGATCTCGTCACGGTCGGGGTCACCGTCGACCTGCCCTTCTTCTCGAAAA AGCGGCAGGACCCCAAGATCGCCGCGCGCGCCAGCGAGGCGATGCGCGCCCGGCTCGACCGCGAGGCTGCCAAGCGAGAC ATTGCGGCGGCGCTCGACGCCGATCTCGCCGATCACCGCATGCATCATGAGCAGCTCGCCAATGCACGTACGCGGCTCGT GCCGCTCGCGAAGAAGCGCGCCGAGCTCGATCTTGCAAGCTACGCCGCCGGAAAGCTCGACCTCGGGACCGCGCTCCTGT CGACTCTCGCGCTTGCCGAGGCCGAAGTCGATGCGCTGGCGCGCGAAGCCGAGGTCGCGCGCGACGCGATCCGGATCAAT TATATTTATGGGGAGGCAGGTCGATGA
Upstream 100 bases:
>100_bases GTCCGGCGACCAAAGGATGCCCCCGCAAGGGTAACGGTCTTTCTTCCCCGGCGTACAGACGCCGGGGAGGCTTTCGCCCA GTCCACAGCAGGGGGACATC
Downstream 100 bases:
>100_bases CCGATGCAACATCAGCGGCGCGCTGGCGCGTCGCAATCCTGGCCACGGTGCTGATCGCGGGCGGCGGCGGTTATTGGTTG GGACAGAGCGGCAAGAGCGA
Product: CzcC family heavy metal RND efflux outer membrane protein
Products: NA
Alternate protein names: CzcC Family Heavy Metal RND Efflux Outer Membrane Protein; Heavy Metal RND Efflux Outer Membrane Protein CzcC Family; Cation Resistance Protein CzcC; Outer Membrane Cation Efflux Protein
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MRPYFTAALLALPSALHAEPMTLDSALSRAASEAPELQSREAGVDAAQSAAIAADRLPDPKLNIVLQDFPVTGPDAGRFN RDDFTMQVIGVSQDFPNPAKRRARATRAQADIGIARADEAVTAQDIRLATALAWVDLYYAKKELKELDLLDSGLEDLQST VTARLASGAARPAQALEPDQLRAAINDRRSALAAEIARARAQLARFTGDPAADTLGDLPPQSIDEQGLRAGIDALPKLRA LDARALAADAETGLARADKRPDWSVNAAYGRREPNYGDLVTVGVTVDLPFFSKKRQDPKIAARASEAMRARLDREAAKRD IAAALDADLADHRMHHEQLANARTRLVPLAKKRAELDLASYAAGKLDLGTALLSTLALAEAEVDALAREAEVARDAIRIN YIYGEAGR
Sequences:
>Translated_408_residues MRPYFTAALLALPSALHAEPMTLDSALSRAASEAPELQSREAGVDAAQSAAIAADRLPDPKLNIVLQDFPVTGPDAGRFN RDDFTMQVIGVSQDFPNPAKRRARATRAQADIGIARADEAVTAQDIRLATALAWVDLYYAKKELKELDLLDSGLEDLQST VTARLASGAARPAQALEPDQLRAAINDRRSALAAEIARARAQLARFTGDPAADTLGDLPPQSIDEQGLRAGIDALPKLRA LDARALAADAETGLARADKRPDWSVNAAYGRREPNYGDLVTVGVTVDLPFFSKKRQDPKIAARASEAMRARLDREAAKRD IAAALDADLADHRMHHEQLANARTRLVPLAKKRAELDLASYAAGKLDLGTALLSTLALAEAEVDALAREAEVARDAIRIN YIYGEAGR >Mature_408_residues MRPYFTAALLALPSALHAEPMTLDSALSRAASEAPELQSREAGVDAAQSAAIAADRLPDPKLNIVLQDFPVTGPDAGRFN RDDFTMQVIGVSQDFPNPAKRRARATRAQADIGIARADEAVTAQDIRLATALAWVDLYYAKKELKELDLLDSGLEDLQST VTARLASGAARPAQALEPDQLRAAINDRRSALAAEIARARAQLARFTGDPAADTLGDLPPQSIDEQGLRAGIDALPKLRA LDARALAADAETGLARADKRPDWSVNAAYGRREPNYGDLVTVGVTVDLPFFSKKRQDPKIAARASEAMRARLDREAAKRD IAAALDADLADHRMHHEQLANARTRLVPLAKKRAELDLASYAAGKLDLGTALLSTLALAEAEVDALAREAEVARDAIRIN YIYGEAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43846; Mature: 43846
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPYFTAALLALPSALHAEPMTLDSALSRAASEAPELQSREAGVDAAQSAAIAADRLPDP CCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHCCCCC KLNIVLQDFPVTGPDAGRFNRDDFTMQVIGVSQDFPNPAKRRARATRAQADIGIARADEA CEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHCCCCH VTAQDIRLATALAWVDLYYAKKELKELDLLDSGLEDLQSTVTARLASGAARPAQALEPDQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH LRAAINDRRSALAAEIARARAQLARFTGDPAADTLGDLPPQSIDEQGLRAGIDALPKLRA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LDARALAADAETGLARADKRPDWSVNAAYGRREPNYGDLVTVGVTVDLPFFSKKRQDPKI HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEEEECCCHHCCCCCCHH AARASEAMRARLDREAAKRDIAAALDADLADHRMHHEQLANARTRLVPLAKKRAELDLAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAAGKLDLGTALLSTLALAEAEVDALAREAEVARDAIRINYIYGEAGR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCC >Mature Secondary Structure MRPYFTAALLALPSALHAEPMTLDSALSRAASEAPELQSREAGVDAAQSAAIAADRLPDP CCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHCCCCC KLNIVLQDFPVTGPDAGRFNRDDFTMQVIGVSQDFPNPAKRRARATRAQADIGIARADEA CEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHCCCCH VTAQDIRLATALAWVDLYYAKKELKELDLLDSGLEDLQSTVTARLASGAARPAQALEPDQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH LRAAINDRRSALAAEIARARAQLARFTGDPAADTLGDLPPQSIDEQGLRAGIDALPKLRA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LDARALAADAETGLARADKRPDWSVNAAYGRREPNYGDLVTVGVTVDLPFFSKKRQDPKI HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEEEECCCHHCCCCCCHH AARASEAMRARLDREAAKRDIAAALDADLADHRMHHEQLANARTRLVPLAKKRAELDLAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAAGKLDLGTALLSTLALAEAEVDALAREAEVARDAIRINYIYGEAGR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA