| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487912
Identifier: 103487912
GI number: 103487912
Start: 2569656
End: 2570933
Strand: Direct
Name: 103487912
Synonym: Sala_2432
Alternate gene names: NA
Gene position: 2569656-2570933 (Clockwise)
Preceding gene: 103487911
Following gene: 103487915
Centisome position: 76.82
GC content: 56.49
Gene sequence:
>1278_bases ATGAAGCGCGATCTTGTTCGCGAACTGATCGAGCGCTGGCGCGGCGATTCCGGCTCGACCTATCAAAGCTGGTTCCTGTG GGAGGAACGACTGAAGAATTTTCGGTCGATCAGAAGAGGAATCTCGCAGGTCGTCGCCGAAATTGAGGCCGGCACCTTCG GAGCGGCATATCGGGGCTCGTCATTGGAGATCATTGTTCATTCAATCGCCGAGCAACGACAGATTTTCAAAGGTGCGGAT CATGCTTTCTTGTGGAAGCCCAAACTCCGAATCCCGGATATCTACGAGAACGCCGACAATCAACGAGCTTTTGGCAGACT TCTTCACCATTGCTCCTGTTGCGATACCGCCGAGGAGGTCGTCGCCGGGATCCTCGCAATCGACAGACAGAAGATCAAGG GGTTGGGTCCTGCGGTAGCCAACATTCTCTATTTTCTGCATCCCACCCTTGTGCCTCCGTTCAATACGGCAATCGTAAAG GGCTACAACGCGCTGACGGGTGCGAATGTGAAGCTTGGCAGCTGGGAGCATTTTCTCGCGATGCGCGCGGGCATTCTGGA TCTCAACGATTGCTACCGGGATCTTCTCTCCAACGATTTGGGCGCGATAGGAGGGCTGCTGTTCGATATCGGATCGGGAC GGTTTCCAGCCCCACCGCTCAGCGGTTCGAGCGAAAATGCTCGCGATTGGATGGCCTTGCTGAATGAAACGCGCTCACAG TCCGACAAGTTCGATAAGGGGCTTGCAAATCAGAAAGAGAGCGACCGGACGCATAGCGAAGTCCAATCCTGGCTTCGGGA CCTCGGCCTTGCACTTGGATATGACGTCTGGGTAGCGGCAAATGACCGGGGGCGCCTTCATGAGGGTGTACCGCTCGGGT CTCGATGCCTCGATAGCTTGCCGCATGCCATCGCAACCGCTCAAGGAAGCGATGCCATAAGACTGATCGACATCTTATGG CTCGAGCAATCGACGGCTACGGTCGCGGCGGCATTCGAAGTCGAGCATTCGACATCCATTTATTCCGGAATTGTCCGCAT GCTTGATCTCGCGCTGAGCAGCGAGAATCTTCATTTGTCGACGCCACTTTTCCTGGTTGCACCCGATGCGCGAGAAGCCG ATGTCCGCGCTCAGCTCCGACGCCCGGCTTTCAGCCGGATCGGTGATCTCGACATTTCCTACCTGCCCTACGCCGAGCTC GAACAGAACAGGGTCGCCATTGCCCGCTTCGGTACGGGCCTGAAGGCGATCAAGGCGATCTCCCATCCATTGCCGTGA
Upstream 100 bases:
>100_bases TTTCGCCTTTCGCTAAGGGCCGGATCGAGCGAACTGTCTTGGCCGGCAAGCCGCAGGTGGAAAACAGCAATTCGGAATGG ATCAAGCGGGGGCTATAAAC
Downstream 100 bases:
>100_bases GGCAGCCGACGACGCGTAGGCCTCCGAAAGCAGTTGGTCTTTGCATCCTCGCGGCGTCACAGGGAAAGCCGGGCATCGAA ATCGCGCGCGCTACCGACGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MKRDLVRELIERWRGDSGSTYQSWFLWEERLKNFRSIRRGISQVVAEIEAGTFGAAYRGSSLEIIVHSIAEQRQIFKGAD HAFLWKPKLRIPDIYENADNQRAFGRLLHHCSCCDTAEEVVAGILAIDRQKIKGLGPAVANILYFLHPTLVPPFNTAIVK GYNALTGANVKLGSWEHFLAMRAGILDLNDCYRDLLSNDLGAIGGLLFDIGSGRFPAPPLSGSSENARDWMALLNETRSQ SDKFDKGLANQKESDRTHSEVQSWLRDLGLALGYDVWVAANDRGRLHEGVPLGSRCLDSLPHAIATAQGSDAIRLIDILW LEQSTATVAAAFEVEHSTSIYSGIVRMLDLALSSENLHLSTPLFLVAPDAREADVRAQLRRPAFSRIGDLDISYLPYAEL EQNRVAIARFGTGLKAIKAISHPLP
Sequences:
>Translated_425_residues MKRDLVRELIERWRGDSGSTYQSWFLWEERLKNFRSIRRGISQVVAEIEAGTFGAAYRGSSLEIIVHSIAEQRQIFKGAD HAFLWKPKLRIPDIYENADNQRAFGRLLHHCSCCDTAEEVVAGILAIDRQKIKGLGPAVANILYFLHPTLVPPFNTAIVK GYNALTGANVKLGSWEHFLAMRAGILDLNDCYRDLLSNDLGAIGGLLFDIGSGRFPAPPLSGSSENARDWMALLNETRSQ SDKFDKGLANQKESDRTHSEVQSWLRDLGLALGYDVWVAANDRGRLHEGVPLGSRCLDSLPHAIATAQGSDAIRLIDILW LEQSTATVAAAFEVEHSTSIYSGIVRMLDLALSSENLHLSTPLFLVAPDAREADVRAQLRRPAFSRIGDLDISYLPYAEL EQNRVAIARFGTGLKAIKAISHPLP >Mature_425_residues MKRDLVRELIERWRGDSGSTYQSWFLWEERLKNFRSIRRGISQVVAEIEAGTFGAAYRGSSLEIIVHSIAEQRQIFKGAD HAFLWKPKLRIPDIYENADNQRAFGRLLHHCSCCDTAEEVVAGILAIDRQKIKGLGPAVANILYFLHPTLVPPFNTAIVK GYNALTGANVKLGSWEHFLAMRAGILDLNDCYRDLLSNDLGAIGGLLFDIGSGRFPAPPLSGSSENARDWMALLNETRSQ SDKFDKGLANQKESDRTHSEVQSWLRDLGLALGYDVWVAANDRGRLHEGVPLGSRCLDSLPHAIATAQGSDAIRLIDILW LEQSTATVAAAFEVEHSTSIYSGIVRMLDLALSSENLHLSTPLFLVAPDAREADVRAQLRRPAFSRIGDLDISYLPYAEL EQNRVAIARFGTGLKAIKAISHPLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47083; Mature: 47083
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDLVRELIERWRGDSGSTYQSWFLWEERLKNFRSIRRGISQVVAEIEAGTFGAAYRGS CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SLEIIVHSIAEQRQIFKGADHAFLWKPKLRIPDIYENADNQRAFGRLLHHCSCCDTAEEV CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHH VAGILAIDRQKIKGLGPAVANILYFLHPTLVPPFNTAIVKGYNALTGANVKLGSWEHFLA HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEECCCHHHHHH MRAGILDLNDCYRDLLSNDLGAIGGLLFDIGSGRFPAPPLSGSSENARDWMALLNETRSQ HHHCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SDKFDKGLANQKESDRTHSEVQSWLRDLGLALGYDVWVAANDRGRLHEGVPLGSRCLDSL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH PHAIATAQGSDAIRLIDILWLEQSTATVAAAFEVEHSTSIYSGIVRMLDLALSSENLHLS HHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEE TPLFLVAPDAREADVRAQLRRPAFSRIGDLDISYLPYAELEQNRVAIARFGTGLKAIKAI CCEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCHHHCCCCEEEEHHCCHHHHHHHH SHPLP CCCCC >Mature Secondary Structure MKRDLVRELIERWRGDSGSTYQSWFLWEERLKNFRSIRRGISQVVAEIEAGTFGAAYRGS CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SLEIIVHSIAEQRQIFKGADHAFLWKPKLRIPDIYENADNQRAFGRLLHHCSCCDTAEEV CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHH VAGILAIDRQKIKGLGPAVANILYFLHPTLVPPFNTAIVKGYNALTGANVKLGSWEHFLA HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEECCCHHHHHH MRAGILDLNDCYRDLLSNDLGAIGGLLFDIGSGRFPAPPLSGSSENARDWMALLNETRSQ HHHCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SDKFDKGLANQKESDRTHSEVQSWLRDLGLALGYDVWVAANDRGRLHEGVPLGSRCLDSL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHH PHAIATAQGSDAIRLIDILWLEQSTATVAAAFEVEHSTSIYSGIVRMLDLALSSENLHLS HHHHHHCCCCCCEEEEHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEE TPLFLVAPDAREADVRAQLRRPAFSRIGDLDISYLPYAELEQNRVAIARFGTGLKAIKAI CCEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCHHHCCCCEEEEHHCCHHHHHHHH SHPLP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA